Array 1 18971-19365 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIF01000027.1 Corynebacterium striatum strain WP1a NODE_27__pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18971 29 100.0 32 ............................. ACAGACCACACCGACCCCGGCGCTGGTTTCCC 19032 29 100.0 32 ............................. CACCGCAGCGGAGACACTTTCCCCAAACAACC 19093 29 100.0 32 ............................. TATCCCAACGATTCGTAGACGAGACAGACGCG 19154 29 100.0 32 ............................. GCGGCACCGACACCGCCCACGGCGGCACCCAA 19215 29 96.6 32 ............................T TTTGCTGCCATCAGCCACCGCCTTATCCACGT 19276 29 100.0 32 ............................. GCCATCAACCCATGCAGACCCCAGCACACGTG 19337 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GCTCCGCTGCCTCAATTTCAATTTCGGCTGCATCCTCCCACCCTGCGGGGATGTCCATAGTGGGGCAGGTCCCCACGCCATCGAGGGAGGTCCAGATCTCTGGCATGATCGCCGCGATGCTTTCGGGAATCTCTGGGTTGATGCTCACGGAGCCGGTGGCGCGGTCTACGATGTAGCGACCATCGACGGTAGCGATGGCGGTTGCGGTGGTCATTTTCTTTTCCTTTCTTAGGGGCTTCCCCTTCCGAAAATGACTATACCGGGTATAGGGCTGCCATGCAAGATCAACGCGATAACCGCAGGTGACGACTATTTGCCACCACTTAACTTTCATAACCAGCACTATAGGCGCTATAGTAATGCTGTAAGCGAAAAGGCCACAAGCCCACACCCCCTGAAAGGAACCGCAATGACCAACCTTGAAAACCTCGCCTACACCAAATTCACCACAGACGACTCCTTCACAACGCACAATGTCGCTCACCTCGCCTACCATGACG # Right flank : CCCGGTCCGCATCATAGTCAGCGGCGACACCTTCACGCTGCGCACACGTTAACGCACCAAACCACCGCACCGGCGGTGGTTATTTTTTTGCCCTCACCAACCCAGACTGAACCGCCCCCACAGTCAGACCCGAATCAGACTGCATTTCTACCCAAGTGGCACCGGCTGCACGCGCATCCGCCAAAGCCTGATCACGCTCGCGCTGCAACATATCACGCACAGCATCATGTGAGCGCAGATTCAACGCGGCGCGGCGTAAATTCTCCCTGGCGGCTTCTTTCTCCATACCTACAGACTATACCACCTATAGCGGGTGCGTGCGAATCAAAAACCCCAGACCTGTACGCGACCCTAGCAACATTGCCTTCCGACCCTCTGCGATGGTGGGGGGAGGGGGTTGTCCCCTGTCTTTTGTTGTTGGTTGGGTTTAGGTTTTGAGGCCTGGGTGTTGTTCTTTGGGGTATTTGGCGCGGTTTGCGCGGGTTTGGTGTCCTTTGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28-2191 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIF01000023.1 Corynebacterium striatum strain WP1a NODE_23__pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28 29 96.6 32 ............................G AAGTCCCAGCTCACTACCGCATAGCAGATGCA 89 29 100.0 32 ............................. TCGTGCCACTCTTCCTCATTTTCTGGTTTAAA 150 29 96.6 32 ............................G TTGGCCCGCGTGGCGGCGTCACCCGTGTTACT 211 29 100.0 32 ............................. ATATGTTCCAGCTTCGGACGTTACGGTGACAA 272 29 100.0 32 ............................. GATAATGCGGCGTGCGCGGGCGAGGGAAGGCA 333 29 100.0 32 ............................. AAACGCCTACGCACAGAGCTAGCGAGACTGCA 394 29 100.0 32 ............................. TTATACCGGGGCCACATTGATGGCTATGAGCT 455 29 100.0 32 ............................. CGCCATAAACCGCCCTATACCGCCTTATTGCA 516 29 96.6 31 ............................T TCCATTCTGGCTAAATAAGTGGGGATACCCG 576 29 100.0 32 ............................. GCATCATCTCCAGATCGACGCCGGGGAACCAC 637 29 100.0 32 ............................. ACTTGGTGGCTCGCGTGTGGGCTTCAAGGCGT 698 29 100.0 32 ............................. GGGACGCCCGCTACGCAGCCCAATTCCACGCA 759 29 96.6 32 ............................T AGGAAGGCGCTCCAATCTGGACGGCTTGGCCT 820 29 100.0 33 ............................. CCCCAACCACCACAGAAAGGAACACCCACAATG 882 29 100.0 32 ............................. GGGCTGTTGAGCAGGGCGTTTAACTAGGTTCG 943 29 100.0 32 ............................. CCAGACTGAACCGCCCCCACAGTCAGACCCGA 1004 29 100.0 32 ............................. CACGTTCACGTGGCATCACAGCAGCCATTGGG 1065 29 96.6 32 ............................G TTCAGTCCCATCCTCCTTGTAATAGGAAGGCG 1126 29 96.6 32 ............................T TCGACATCATCACCGACGATGAAGGCAGGGCC 1187 29 96.6 32 ............................G GGGAAAGCCCCTAAGAAAGGAAAAGAAAATGA 1248 29 96.6 32 ............................G TGTGTTGTCCGCCTGTTTGTATTGGCGGTGGC 1309 29 100.0 32 ............................. GCAAGGCCAGCGCACGGGAGCGCTTCGAGGAA 1370 29 100.0 32 ............................. ACAGACCACACCGACCCCGGCGCTGGTTTCCC 1431 29 100.0 32 ............................. CACCGCAGCGGAGACACTTTCCCCAAACAACC 1492 29 100.0 32 ............................. CGCCCCCACAGTCAGGCCCGAATCAGACTGCA 1553 29 100.0 32 ............................. GCCCAGCAGGTAAAAGACGCCCTCCAAGAACT 1614 29 100.0 32 ............................. TATCCCAACGATTCGTAGACGAGACAGACGCG 1675 29 100.0 32 ............................. GCGGCACCGACACCGCCCACGGCGGCACCCAA 1736 29 96.6 32 ............................T TTTGCTGCCATCAGCCACCGCCTTATCCACGT 1797 29 100.0 32 ............................. GCCATCAACCCATGCAGACCCCAGCACACGTG 1858 29 100.0 32 ............................. CCACCCTCAAATGTGGCAGTGGGTAGCAGGAG 1919 29 100.0 32 ............................. CCTTAAGGACTTCGAGAACGCGCCAGAGGGCA 1980 29 100.0 32 ............................. GCACAATGTCGCTCACCTCGCCTACCATGACG 2041 29 100.0 32 ............................. ATACACCGCCCTAGTGGACTTCCTCACCAATC 2102 29 100.0 32 ............................. CATAGCAGTCCCTCATTTCAATATCGGCCAGC 2163 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.1 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : ACGCACAGCATCATGTGAGCGCAGATTG # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTCAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACATTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9544-13966 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIF01000032.1 Corynebacterium striatum strain WP1a NODE_32__pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9544 29 96.6 32 ............................T GAGCGCCAGGGTGGCGGTAAGCGTGACGCGGA 9605 29 96.6 32 ............................T CGAAGGCCGGGTACCCGCCATAGATGGACTGG 9666 29 100.0 32 ............................. ACCCCGGAAATCAATAGGGCGTTCCGCTGGGC 9727 29 100.0 32 ............................. ACCCCTTTCGCCTCCCTGCTACCCACTGCCAC 9788 29 100.0 32 ............................. GCTTGGTTTGTTGCACTGGGGTGTTGCAGCGC 9849 29 100.0 32 ............................. CACAAGCCCCTAACCGCACACGCGACAGGGGT 9910 29 96.6 32 ............................G TCGGCGCACTGTCCGAGGCTTTAGATGGCTTC 9971 29 96.6 32 ............................G TCGGTGAAAAATTTAGTGGTCATTTCTTCTCC 10032 29 96.6 32 ............................G CTACTCACGGGAAACGATGTCCACAATGCTAA 10093 29 100.0 32 ............................. TCGACGACGATGACGACGAGCCGACCGAAATC 10154 29 96.6 32 ............................G TTTTTGAGTCATCCGGTAATGGAGTACCTAGC 10215 29 96.6 32 ............................T GCCTCCGCCGCGCACTCGGCCATGACCGGACA 10276 29 96.6 32 ............................G TTTTGAACGCGCCACTAAGGTACTTCTAGCCG 10337 29 100.0 32 ............................. CGCGGGACCCTGGACGTGCCGTCCGTACTGCA 10398 29 100.0 32 ............................. GGTCAGGTCGTCTACAGAGGTGGTAGAAATTC 10459 29 100.0 32 ............................. ATATCACGCACAGCATCATGTGAGCGCAGATT 10520 29 100.0 32 ............................. CGGGTCGCCATACCTGGAGCCTTCCTCACTGT 10581 29 100.0 32 ............................. GCGCACCCCGTGGCGCTCAAACTCGCGCTTCG 10642 29 100.0 32 ............................. AGCCGTGGTGGCTCCGCTACAAAGGCTCAATC 10703 29 96.6 32 ............................T AGTGGATTTTTTAATTCCCTTAGCGCTCTGCA 10764 29 100.0 32 ............................. GGGCCGCCGGGGGTCTCCGGCCAGTTGAACAG 10825 29 96.6 32 ............................T TGAGCGCACACCTATAGAGTAAAACGACGAAA 10886 29 100.0 32 ............................. GATCTGGGAGCATACCCACGCCACGGCATCAG 10947 29 100.0 32 ............................. GTGTGCGCAGCGTGAAGGTGTCGCCGCTGACT 11008 29 100.0 32 ............................. GAACGAGCGGAACATGTCGCAGGCGGAAGCGG 11069 29 100.0 32 ............................. GTGTGCGCAGCGTGAAGGTGTCGCCGCTGACT 11130 29 100.0 32 ............................. GAACGAGCGGAACATGTCGCAGGCGGAAGCGG 11191 29 100.0 32 ............................. GTGTGCGCAGCGTGAAGGTGTCGCCGCTGACT 11252 29 100.0 32 ............................. GTCACGCGAGCGTCGTCCGGCAGAGGCTCGTT 11313 29 100.0 32 ............................. GGTGACGAGTTCTACCGGGTCAAGAGTGAGGT 11374 29 96.6 32 ............................T CGTCGGCGGTCCAAAGGACACGATGATATGGA 11435 29 96.6 32 ............................T CACTGCCCGGCTCGTAAATATTCTTCGAGCTG 11496 29 96.6 32 ............................G GGAACTCACCAAACTTTGGCAGCTGAATGGTC 11557 29 100.0 32 ............................. CGCCCCCACAGTCAGACCCGAATCAGACTGCA 11618 29 100.0 32 ............................. CGCCATCGCTACCGTCGCTACCGTCGATGGTC 11679 29 100.0 33 ............................. TTTGGGCCGGTGTGGAGTACGAGCGCCGCGTCG 11741 29 100.0 32 ............................. GCGTCCACAACGTGCTCGCTTGCTTGGATCAG 11802 29 100.0 32 ............................. GCCGAGGAAGCCGAGAACGAGGAAGCAAAAAT 11863 29 96.6 32 ............................A CTGGAGGATGTCAGGAAGGCGGTCACCTAGCG 11924 29 100.0 32 ............................. CGCGGGACCCTGGACGTGCCGTCCGTACTGCA 11985 29 96.6 32 ............................T CCGTGGTGGCGGCGTCCAGCAAAATCGCTGGA 12046 29 100.0 32 ............................. ACCTGGGCAAGAACCATATGACAATGCCTAAC 12107 29 100.0 32 ............................. TTCGATTCCCGCCGAGGTTACGGCAATGCCGC 12168 29 100.0 32 ............................. TAAGTTTCAGACTGCGGCGCTGCAGGCTATCG 12229 29 96.6 32 ............................G GACCGCTTCGCAAAGAGACTGAAGCAAGACGG 12290 29 100.0 32 ............................. CAAGACCCGCGAAGGCTACACACGCCTCACCA 12351 29 100.0 32 ............................. ATGCACTACACCGGGGCAGAAGCCTGTGCCTT 12412 29 100.0 32 ............................. ATTTCGCCCCACACCGCACCCCTATTGGAATG 12473 29 96.6 32 ............................G TAAATGAGCAACGAACTCGCACCAAACACCAG 12534 29 100.0 32 ............................. GTCATCGCCGCCGACGCATGCCCCAGCTGACG 12595 29 100.0 32 ............................. AATGGTTCGCGGGCGCTGCCCCACTCGGTGTA 12656 29 96.6 32 ............................G AAGTGGACCGCTTCGCAAAGAGACTGAAGCAA 12717 29 100.0 32 ............................. CGGATCCGCGTCAACCCATCACATTTCGCCGA 12778 29 100.0 32 ............................. CAGAATCGGCTATCCATACTCGGCGTTGGCCC 12839 29 100.0 32 ............................. TAGCGCGGCAAAAAGATCTTCGCGCCATTCAA 12900 29 100.0 32 ............................. CAGCAGGGCGAGAATCGGTACAAGACGGAGTT 12961 29 100.0 32 ............................. GTGGGTGACCTCCGCGCGCTCTGTCGTGGACG 13022 29 96.6 32 ............................T CACTATTAATGGAAGTAACGCAAGTGAAGTAC 13083 29 96.6 32 ............................G CCCCGCGCTGCCCGTATCCGAGATCTTCTTCG 13144 29 100.0 32 ............................. AATGATTGATTACGAGTACCGCTCTGGGCATC 13205 29 96.6 32 ............................T TACTAGCGCGATAAACATTCCTTCGATGTATC 13266 29 100.0 32 ............................. TACACCGACTGGATGAAGCGCATGATTGCCTA 13327 29 100.0 32 ............................. CAACAAGGGCCGCACAGCCCTGATAGCGATGA 13388 29 100.0 32 ............................. TGTGACCGTGCCCTCGCGGTACTCGAAGCAGC 13449 29 100.0 32 ............................. CACCGCGATGATTAGTGCAAGTGCACTCATTC 13510 29 100.0 32 ............................. TCAAGCGTGTTATTGGGCTCGTTTGTCTGGTT 13571 29 96.6 32 ............................T AAGGTGCGGGGCCAACGCCCGGTACAGCCCCC 13632 29 96.6 32 ............................T CACTATCGGAGATAGGACGTAGCGCGGGCGTA 13693 29 100.0 33 ............................. CGTATTGCGCGCGGGAGCATGGTCTCTCGACGC 13755 29 96.6 32 ............................G TCTCGCGCCTTCTCAAGGGACCTCTGAAGCGA 13816 29 100.0 32 ............................. TGTCTACCGACTAATCGACCGGACACAGTTCC 13877 29 100.0 32 ............................. TCACGCAGGACGATTTCGATTTCCTGCTGGGC 13938 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 73 29 98.9 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : ATATCACGCACAGCATCATGTGAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //