Array 1 13-774 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLG01000208.1 Cronobacter sakazakii strain cro181 contig208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 ............................. CCCCGCTCTTTTTTCTGGCAGGTAATTATATC 74 29 100.0 32 ............................. CTGCCGGTTTCAACGGTAACATTGTCCACGAT 135 29 100.0 32 ............................. CCTCGCCGCGCAACTCCCGTACCGTTCTTTCA 196 29 100.0 32 ............................. CATCGCGCCCACGAACGCGGCGCACCACGGCG 257 29 100.0 32 ............................. GTAGACTTCCCGCATACAGTAATCAACCACGC 318 29 100.0 32 ............................. CCACAATTGGCGCGCTCATTTAGCTCCCTGAA 379 29 100.0 32 ............................. CCGCCGTAACGGCTGATTATGGTCGAGTTCTG 440 29 96.6 33 .C........................... AGAACACGTTCCCGATGGGCGGCGGCTACTTCC 502 29 96.6 32 .C........................... GTGCTGGTTTATGTCAGACGGGATTTTGCTTA 563 29 96.6 32 .C........................... TGGAGCCGGGGCCAGCGGACAGCGCTATTTAC 624 29 96.6 32 .C........................... GCGTTTTACAACACCACTCTCGGCGAGCTGTG 685 29 100.0 32 ............................. CAGCATGAGGCTCACACCAGTATTTGGCATGG 746 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GTGCGCGGACACC # Right flank : TCGGCACCGGTTGCGGCGTTTTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21432-21767 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLG01000062.1 Cronobacter sakazakii strain cro181 contig62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21432 29 100.0 33 ............................. CTAAATTAGCAGATATTAGCGCACTGCTTGTTG 21494 29 100.0 32 ............................. CTTCAGGTTTCCGACCTGCCAAATGCCATGCA 21555 29 100.0 32 ............................. CAGCCTGAATATGACCCTCGGTGAGCAGGGAT 21616 29 100.0 33 ............................. TGGGGCGATCTCTCGCTCAAATTAACCACCGGC 21678 29 100.0 32 ............................. CCTTCTGCGCTCCCTCCGGAGATTTTTTCGAT 21739 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 33 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACTTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CGCTGGTGGCGGTAAGCCAGGTGCGCGGACACCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6-461 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLG01000076.1 Cronobacter sakazakii strain cro181 contig76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ............................. CAGCATGAGGCTCACACCAGTATTTGGCATGG 67 29 100.0 32 ............................. TCGGCACCGGTTGCGGCGTTTTTAGTCAGAGC 128 29 100.0 32 ............................. AACGGTGAATTCTTAGAGGCTTAAGCACACTG 189 29 100.0 32 ............................. CGGAGTTGAATGGCGGGCATCTTTATCAGGAT 250 29 100.0 32 ............................. CCATATCCCTCGACAATTTGCGGTATGACTTC 311 29 100.0 32 ............................. CCCGTGCAAACGAGCATCGACGGTGGCGTGGT G [332] 373 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 434 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : CTGATC # Right flank : GCTCAGGCTCTTCGCGCCTGTCACTCGCCACCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5026-6763 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRLG01000103.1 Cronobacter sakazakii strain cro181 contig103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5026 29 100.0 32 ............................. CACGCTGTGAGAAAAATTCCGGCGCATACGCC 5087 29 100.0 32 ............................. CCAGAGTTCTGGACTGATGAAGATCTGTCAGG 5148 29 100.0 33 ............................. GGCTGGCAACCGGGCAGGGCAGCGCCGCGAGAC 5210 29 100.0 33 ............................. TTTGTCCTGCGTGAGGCCAATCTGTTTCATCCT 5272 29 100.0 32 ............................. GAGGCCCGCAGCAAGGCGCAAAAAGACATTGA 5333 29 100.0 32 ............................. GGGCTGCATACCGGCGGGCCCGAGCGCTTCCC 5394 29 100.0 32 ............................. GTTCAACGATAAAACGCGGATCACCAGTGTTA 5455 29 100.0 32 ............................. CATCACCCAAATCTCTGATAATTCAGGGAAAT 5516 29 96.6 32 ............................T TCCACATTCATTATATTGACGGAAACGACAAT 5577 29 100.0 32 ............................. GAGTGACTGTGCGCCCCTCCAGAATCCACAGT 5638 29 100.0 32 ............................. CATCCATTGCTCGCGTCGCCCAACCATTAGGG 5699 29 100.0 32 ............................. ATTGATGCCCGCTAACCCGGTGCGGGCGTACA 5760 29 100.0 32 ............................. CCAGTATCACCTTTCAATTTTACCCCTTCCAT 5821 29 100.0 32 ............................. CCCCTGACCTGCCAGTGCTTCCACTGTCGCCA 5882 29 96.6 32 ............................C ATCGATATCGACTATTTCCCTTTCAATCGCCA 5943 29 100.0 32 ............................. TGCCGCATTTGCGGTGCTGAAATGACAATTCA 6004 29 100.0 32 ............................. CATGGCTTGACCCTGATTTGAATACAAAAGAA 6065 29 100.0 32 ............................. CTTCAGATCGGCCAACGCGACACGTTTGATTA 6126 29 100.0 32 ............................. CTTCAGATCGGCCAACGCGACACGTTTGATTA 6187 29 96.6 32 ..........................A.. GATATATCAACTAGTTGAAATATATCGTTTTT 6248 29 93.1 32 ...........G................T ATCCCCCAGCATAACTCATCATCTCGCTGGCC 6309 29 96.6 32 ...........G................. GGGTTGTTAGTAATAAGGTGGTAACAGTGGTA 6370 29 96.6 32 ...........G................. CGCCAGGCAAACCACCACGCGCCGACCAGCTG 6431 29 93.1 32 ...........G.A............... GTGGTAACAGTGGTAACAGTGGTAACAACCAT 6492 29 93.1 32 ...........GG................ GATTCTGTCGGCGGGTGGCAGAACTCGCTGGA 6553 29 96.6 32 ...........G................. TATTCATCTTAACTCCTAAATTTTGTGAAAAA 6614 29 96.6 32 ...........G................. CGACACGATCCGCCGCCTGGGTTACGAAAGCG 6675 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 6735 29 89.7 0 ...........G.........G......A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.0 32 GTGTTCCCCGCACGAGCGGGGATAAACCG # Left flank : AGATGTCCTCTCGGCTGGTGGTATTTCGCCTCCAGCGCCTCCTGCAGATGCTCAACCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTAGA # Right flank : AGTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCATTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATGGTATCTGTTCTATTTTTGCTAGTTATATTGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCACGCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAATGCGATCCCCGGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //