Array 1 30830-30537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWH010000105.1 Aggregatibacter actinomycetemcomitans strain SL7468 1961, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 30829 33 97.0 31 ................................C AATCTACGATCTAAGCGACGCGTTGCTTCTT 30765 33 100.0 32 ................................. TGTCCCGGTGGTACATAAACTGCATCAAAGGT 30700 33 97.0 32 ................................G AGGCGGAATTGCAACGCAATAAAAAAGCCGCG 30635 33 93.9 33 ............G...................A GATGGTGTACTAAACCTGATTTAATGCTAGTAT 30569 33 81.8 0 .........C..G....A..A....C.....T. | ========== ====== ====== ====== ================================= ================================= ================== 5 33 93.9 32 GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACT # Left flank : TAAGCGGTATCAAGACGAGGGGCATTTAGAAAAGCTCAAGCGAACGATTCAGAAACATAATGAGATTATGACTTATGCTCTACACCGAGATCTGATTCCGTTTAATCCTACGGTGAACATTGCAAAAGAATTTGACAGCCTTACGGTGGAAAATTTCAAGACGCTTAAGCCCGAGGATTTAAGCGAATCACAGTGACATTTTCTATTTATGGAATATTGTTGGAGCTACCGTTTTTTATAGTATTAACGGCATATCTTTAACGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAATGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGG # Right flank : ACTTGGTATACGCTTTTTATGAGCATTTAATCGGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCGGCGTTTAACAAAACGCTCTGTGCGAGTTTGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATGTAATCCTTTCTCAATTTTATTCAACATACGGGTAATCTCCAAAAAAACACCTCTAAAATCGACCGCACTTTTCCCCATAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGTGCGTAATTTTTTCGTGACGTCAACCATGACTTTCAGTTGTTCTAGGGTTTCTTTCCAGCCGCGGGTTTTAAGTCCACAGTCTGGATTTACCCATAAACGCTCTTTTGGCACCACTTGTAACGCTTTACGGAGTAAGTGTTCGATTTCGGCGGCGGTTGGGACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCTATGTCGTTCGGGTAT # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20846-20348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWH010000075.1 Aggregatibacter actinomycetemcomitans strain SL7468 1931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20845 36 100.0 30 .................................... GTAAGGCCGGTCTTACTCAAGAAGCTTTAG 20779 36 100.0 30 .................................... TTTTTGGCGCCACTGAGGGCATTATCACAG 20713 36 100.0 30 .................................... TGTTTCTCTGTCGCCACACTCTTGAATCAC 20647 36 100.0 30 .................................... TTGAGGTAACTATGGCATATAAAACCGGCA 20581 36 100.0 30 .................................... CGGCTTTTCGGCTGATGAAACACTTAACAT 20515 36 100.0 30 .................................... CGGCAGGCAATACGCCGCCGGAGGAAATGA 20449 36 100.0 30 .................................... CTTAAAAAAGATTTTGAGATGCCAATTTTT 20383 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CATGAAAGGTCATCGCGATTACAACTTCAAACACAGCACAGGCGACGGAAAAACCGGTATCGGCAGATATGAAAAAATCGAGCGTTTCGATTTAGATTTTAAAGTACAAGCCACCGAGAAAAATGCCATTTATGGTGCTTATTTATGGAGAAGCGGTAAAAATGAAGGACTGGCGCACAGCAAGGCGAGAGGTTGGGTGCTTGGTATCGACCATAAATTCAACAAACACGTTGCCGTTTACCTTGAAGGCGGTAAAGCGCGCGTGAAAGAAAACGGCAGAAAAGTGGCGGAAGGCACACGTGTCGGTTTAGGTACCCGTATTACATTCTAATTTTATTCAAACAACAATACTGTCTTTTTTGGCCGATGACGCGAGTCATCGGTCTTTTTGCGTTTCTTCGCCCGCATTTAAAAAACGTCGTCAAAATCCACCGCACTTTTGTGTTAAAATCATTTCACAGTGCTACAATTATAGGCAAGATTTACTTTGTTAAGCGCAA # Right flank : CTCGATGGCTCCAAGCCTTATTTTTTCAAGGTTTGGCATCGTTTTTACATTAATAAAAATGCTGAATAATTACGACTTTTACGTAATCATTCAGCATTTTTTCTTTTCAATTTAATTGAAAAAATAACCGCACTTTTGACTAGAAAGTGTTCTATTCGACTTATTTTTCTTTAATGAACAGCTCAATAAATAAACATTCAAACATTTTATTTGTATATTTTTTCAGCGCTTGAACAATCAGTTTAATTAAAATAGTAGTAATTGGTTCGCATTAACTTTCTTCTCTTGAATTTTTACCTCACCAACCAAAATGGACATTCCCGCATATTGTTTTTCCGTTACTTCAAGGCAACGGATAGAGCCATTTTCCGGAAGATTCTGAGATAAACGCCTATTATGCTTTTCTAAAGCATCTCTACCTCGAATTAATCTTCCATATACTGAAAGTTGCAGCATTTGATAGCCATCTTTTAGTAGAAATTGACGAAATTTATTTGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 39212-40177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWH010000075.1 Aggregatibacter actinomycetemcomitans strain SL7468 1931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 39212 33 100.0 34 ................................. ATTTCTCCAGTTTTAAATCAAAAACAGACCAATC 39279 33 100.0 34 ................................. AAAGAAGCAAAAGAAGAGATCACTCAAATTACAG 39346 33 100.0 33 ................................. TTTTTTAATTTTGTCATTTTTGTATCTCCTGCC 39412 33 97.0 33 ................................T GGTAGGCAAAGCCAGCCGTTACAATCAGCAATT 39478 33 97.0 35 ................................G TATTGCCGAATGGGTTTTGAGCGCGAATTGGCGGC 39546 33 100.0 34 ................................. AAAGTTACGGTCTTTTATTTTCGTTTTACAGTAA 39613 33 97.0 34 ................................T GATGTCTGATATTTTTACTGCAATGCAAAATATG 39680 33 97.0 34 ................................C GTCTGATTTCTTGACAGCTTCCGTGATAAAGTTT 39747 33 100.0 33 ................................. CCTAGTGGAAATCTCCCATCAACAACTGAACCT 39813 33 100.0 33 ................................. GCGAATAAATTATTTTCTCCTGCAAGTGAAGCA 39879 33 100.0 33 ................................. CTTAAATGATATAAAATTTTAGATCATAAAAGA 39945 33 97.0 35 ................................C AGGCGGGAAACGCGTGTAAACGTTATTGTGTTTAC 40013 33 97.0 33 ..............A.................. ACCAATTCAATTGCCCTAACGGCACTGGTCGGG 40079 33 90.9 33 ...........TG........T........... CTACCGGCACCTGGAATTGGTTAGCCAATACCC 40145 33 87.9 0 ....T.......G........T..........G | ========== ====== ====== ====== ================================= =================================== ================== 15 33 97.4 34 GCAGCCACCTTCAGGTGGCTGAGTGTTGAAACA # Left flank : ACCTATGATATTTCTTTAGGAGACTCGGAGGGGCAAGCCAGGTTGCGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCACCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCACCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGGCATGCCCATTATACTTATCCCACTCTCTATTTTGAAGTAAGTTAGCGAAATGCAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGGA # Right flank : GGGGACTCTGTTACATCTGAACTCTGATGCCAACTAAACTAAGCGCCTTATAAAAATAAGGTGCTTTTCTTTTCCCGCATACCAACACAAAACTCCTTGCCCTTCCTCCACAAAATATATAGACTGAGTTCCGTTATTAGTCGGGGTGCTTTATGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGGCGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTTTCTCTTCTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTCATCGAAAAGGAAAAATTATGCAATATGGTTTTTGTCGCCCTGTGCCGGTAAATGGCGGAGGGCATTATGAGTAAGGTTGCGAACGTTAACTATCGCCGGTTAGGACAGCGGCGGCGGTGCATGTCGTTTGGTTCATCGGTGACCGTGCAAAATACCTTGAACGTGGTTGATATTTATGCTGTGTCACTCCAAACCATCCAATGTCAGCGAAATCCATTGTGACA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGAGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //