Array 1 13970-15905 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHIA01000029.1 Pseudoalteromonas rubra strain W5 29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 13970 32 100.0 33 ................................ ATGCACAGCAGAAGGTACAGCAGCCTTTATTTC 14035 32 100.0 33 ................................ ATCTATTCGGCGAAACTCGCGCCACAACCCAAC 14100 32 100.0 34 ................................ AACTTCCACCGCTTGGCCATGTATGGCAGGCAAC 14166 32 100.0 34 ................................ TGCTCGCACCTCTATGTTTACGCTGGTGCAGTAA 14232 32 100.0 34 ................................ AAGACCTGATCGACGTTGCCCAGGAAACTAAACA 14298 32 100.0 33 ................................ CGTAAGGGGTTGGATACAACAGGTGCTTGTTTT 14363 32 100.0 33 ................................ CTCTAGCTTATCAAGTAATTTTAATGTTTCATC 14428 32 100.0 33 ................................ TTTGCGGATATGCGCCAGCATCACCACTGTGCA 14493 32 100.0 34 ................................ TTGGTTATACCAAGCAACAAACTTACTTTCCATT 14559 32 100.0 34 ................................ ATGGACCCGGCAACGGTCAACGCGCTGGTTGCAA 14625 32 100.0 33 ................................ TTGATGAGGTGTCAGGCTATCCGGATAGTGTAG 14690 32 100.0 34 ................................ TTCAAGTTGGAAAGAAGAAAAAGAAAAGCAAGGA 14756 32 100.0 33 ................................ ATGATAACGCTGGCTGTAGTCATAACCAGCAGC 14821 32 100.0 34 ................................ TAACACGCCTGGCAAAACGGCATGATGCGGTAAC 14887 32 100.0 35 ................................ TGTGGGAACTATACCGGGAAGACATAGGAAAGCCG 14954 32 100.0 34 ................................ CAAAAAAAGACATTTACGCGCCTTGCTTAGCTTT 15020 32 100.0 34 ................................ ATTGTTCGGCTGCGGGGCATGCGCTTGCTCTCCA 15086 32 100.0 34 ................................ CAAACAAGAGGATAGAAGATATATGCACTGCAAA 15152 32 96.9 34 G............................... GTCAAACTTGCCAATCCAGAAATATTCGTCGATG 15218 32 96.9 33 G............................... CATGGCATAGCGCACTACATCCTTGTTAATGTC 15283 32 96.9 33 G............................... ATGATCATCAATGATGAAAAATGGGGTAATTGG 15348 32 96.9 35 G............................... CAACAGAAAGCAGTAGTTTGCGGATCGCCTCGGAT 15415 32 96.9 33 G............................... AATGGGGCATTGGTCGCTACCTTTACGCAGTTA 15480 32 96.9 35 G............................... CGCCATCATGAGGTTTAAATTCGTCTCACCTAACA 15547 32 96.9 34 G............................... ATTTGAAGACTTTCCAAAGGCGTAGCCAGCAAAA 15613 32 93.8 33 G..................T............ CGCCTCGTCTGTGCTGGATGTCAGGCCGCTGGC 15678 32 96.9 33 G............................... GATATGTTGCCCAGCTGATTTATATTTGCCTCA 15743 32 96.9 35 G............................... ACCGAGCGAGCGGACTGCACTACCGTATTTTTTAT 15810 32 90.6 33 G......T............A........... CGACAAACAATACAAGGCACAGTTTATTGAAGC 15875 31 81.2 0 G.............T...-A..T..C...... | ========== ====== ====== ====== ================================ =================================== ================== 30 32 97.9 34 ATCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : TCATCATTCTCAGCATTTTTGTGTGGGGCGAAATCCGCTTTTTTAACGCCATCACCACCAACCCAAACAACACACTTAGCGCCGAACAAATGCAGGCCAAACTTGAGCTACTTGCAAACCAGCGCGCCACCTTCCGCGCATTCTGGTTCGACACGCTCCAGCTGATCATACTCAATGTGCTCTTTCCAACCCTCACCGCACTACTGGGCTATGTGTTTGGCACCAGCAGGAATAATGGGGCTTAAAGAAGGCCCCAGTTCTCAGGTTAATACGTTTACCACAGTCTATATTGAATCGCTAAAAAACCTGAAAAAGTGAAAGTGAGCGCTAACCCTTAGTTCTCATGAAAACCCCAGGAGGTTAGCGCTCTTATATGTTCTTTAAAAATAAGGATATTTTTACAGCTGCTCGACTCAGGGCTGGATTGGTTTGCAGGTTTTACCGAGGTTAGCGCAAAATCAGCATTTTTGCTAAGCTGGCTGTGCCTTGTAGCTAAGGCA # Right flank : CATATAGTTGAAGGAGTGCTGGGTATTTGTCCACAAAGCTCAGCCTTTCGGTGATCCTTAATCTTAGCTTAGCAAGTTACGAAGCGATGTTTCGGCCTTGCCTTTTAAATTAGGGTAATCGCGATTTCTCTATGGGTTTGATTGGACATAGTAGCTGTTCAGCCGATGACCACACAATGCCAAGTGCTACTAAGATCAGGCCAGCAAGAAAAATAATGAAGCCTATTAGCAGTGTAAAAATAGCGGCCAGAACTGGGGCACCCAACATAGCATTAAGCCAATCATATTGTGCCGTCAGGTAAACCCAACAGAATAACAGACACCAAGGAAATAAAGTACCGGGCTCCAACAAGCTTGTGACCCAGCTATCCAGTTTGTTTAGAAGCTTTTCAGGTGTTGCCGCCATTGTTTTAGATCACATTTTAATTTAAAAATTTATTCATTTAATTTACATTCTTAGCTGTATAGGCAAAATAAACAATAAATTAAGCGCTAAAAAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24655-25611 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHIA01000029.1 Pseudoalteromonas rubra strain W5 29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 24655 32 100.0 34 ................................ CAATCTCCTATTGATGCGATGTACGAAACTCATC 24721 32 100.0 35 ................................ TTTTTCCTGCTCAGCTTCACCCCAAACACGTAAAA 24788 32 100.0 35 ................................ GTTGCTCGCCGTGGAGCTTGAGTCAAAGTTAGTGG 24855 32 100.0 34 ................................ TCATCGATGCCGTAAATCAGCGCAAAAAGAGAAT 24921 32 100.0 34 ................................ ATCGATGATGGCTATGTGCGGACTGGAACCATCA 24987 32 100.0 34 ................................ TTTGTACTGTTCACAGTTTTTACATGTCCCATAT 25053 32 100.0 33 ................................ TAAGATGCGATAGCATACGCTTCGCTGTATTTT 25118 32 100.0 34 ................................ CAGATGCAATAAAATCTAAATCCACAGGTTCGAC 25184 32 100.0 35 ................................ TGAACCATGTTGATGTCAGACAAGGTGAAGATAAA 25251 32 100.0 34 ................................ TACGATGTCAGAGTGATCAACAAACAAAACCTCT 25317 32 100.0 34 ................................ AAAGTACTGTAAGGACACAGCATGAGACCGCAAA 25383 32 100.0 35 ................................ ACACTATCGTTGACTTAAAAAGCTCGGCTTATTAC 25450 32 100.0 33 ................................ TGAATTTGTGCTTCACGTGCTTGAGCACGTACC 25515 32 93.8 34 .....A........T................. GGGTGCTGCCCGGCAATATCGATCACATCAATAT 25581 31 71.9 0 A.....C...G.....G..A..TA...-...T | ========== ====== ====== ====== ================================ =================================== ================== 15 32 97.7 34 GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Left flank : GATATACACTATGATGGTATTGGTGACTTATGATGTTTCTTTTGAGAGCGAAGATGGACAAAAACGCTTACGTAATCTTGCCAAGGTCTGCCTGGATCATGGAATGCGCGTACAGTACTCAGTATTTGAGTGCGAAGTAGACCCGGCGCAGTGGGTGAGCTTTAAGGCCAAGCTGTTAAAAATCTATGACCCACAAGTCGACAGTTTGAGGTTCTATAAATTAGGCAAAAACTGGCACAATAAAGTGGAACATCACGGCGCCAAAGCGGCCATTGATATTTTTCGTGATCCACTTATTCTTTGATCCCCAATTTGAATACCTCAGCGCTAACCCCTGGTTCTCATAAAAACCCCGGGAGGTTAGCGCTTATGTATGTTCTTTAAAAATAAGGCTATTTTAAATTACCGTTGGCTTGGCAGAGTGTTTGACTTGGATTTTTATCGAGGTTAGCGCAAATCACGCATTTTTGCTAAGCTGGCTGGGCCTTGGCAACAAGGCG # Right flank : TAGGATTAGTTAAGATGACAGGGGGAAGTCGCCTATGAAGCACAGCCCCTTAGGTGTTCTTCTACATTCTTCTATTTCCCAACATCCATGTGGGTTTATGACCTCACTTCCGCAGGCTCTGTTTTGCTCTCCTCTAGCTTATTTTTAGAGCTTTTGCTTTATAGCTGGCTAATTGCTGAAAAACCAATACAATGTCGCGCTCATTTTTAGGTACATATTTAGGATAGATATGAAGCAGTTACCTTCTTTGGCCGGTTTGACTTTGTTGTTGTGCGGTACGAGTGCTATGGCGGAGCAAGTTCAGGTGGTAAATTATGATTATGTTGAAGCGGGTTATAAGCGTCACGGTGATCAATCCGACTTTTCTACTGGCGGTATGCAATTAACGGTCAGTAAACGTGTCGACGAGTTTTACTTTGAATTGAATGCTGAGCAGTTCGAGAGAACTGTCAACCAAGTTAATACTGCTGAAGGCTTTGAAACTTTCCATACAAATCATG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGACGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //