Array 1 29628-28136 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRUD01000028.1 Phocaeicola vulgatus strain AF25-30LB AF25-30LB.Scaf28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 29627 33 100.0 32 ................................. TTATCGGGAGGGAATGATTGATGTTTTGGTAA 29562 33 97.0 33 ................................C ACCTTCACTTACTGCATAAGGAAGTTGTGTTTC 29496 33 97.0 33 ................................T TTTTTGATAGGAAGCTGTGTTCTTACGGTGATA 29430 33 97.0 33 ................................C TGATCACAACTACCATCGGTAACAACAGTAACG 29364 33 97.0 37 ................................T TACAAGAGAAAATTCCCGTTGCAGTTCCGTATAGGAA 29294 33 97.0 32 ................................T TTCCTCATCGGGGATAAGGTAGGAGTGAATAT 29229 33 100.0 35 ................................. CTGTCATGGATTTATTTACTCCATCCACGGTAGTT 29161 33 100.0 33 ................................. TTCACAAGAATGTCCGCACCATCCCCACTAGGG 29095 33 97.0 32 ................................C CGTTGCAGTTCCGTATAGGAAACAGTCTTGCA 29030 33 97.0 32 ................................C ATAAATGGACGAAAATGGAATAACCCCTGTTT 28965 33 100.0 34 ................................. TGTAATCCTTCCATCCGGCTTCTCTTGCATCTTC 28898 33 97.0 32 ................................T AAAAATAAGATGAATACCATATACTCTGCGGT 28833 33 97.0 35 ................................G GTAAGGAGGCTAAGTGGATAAAGACATTAGAGAAA 28765 33 100.0 33 ................................. TGCTTATCAAGCTGTGGCGGAACGTGGAATGAA 28699 33 97.0 34 ................................C CGACGTGGTAGATGAGCCTTTTTTAGCAAGCAAA 28632 33 100.0 32 ................................. TTCTTTAGAACAAGACTTTGAATATCATCATA 28567 33 100.0 34 ................................. AGCTGATGTTGCTTTTGTTTGGTGACAGAAGCAA 28500 33 97.0 34 ................................C ACCATACAACAGCCAGCAAGCGACAGAAATCAAA 28433 33 100.0 32 ................................. TAGCAGATCCCATCCCTTATAGATATCCTCCA 28368 33 100.0 33 ................................. CTTATAGAGATTTGACAAACAGATATAGGGTAT 28302 33 97.0 33 ................................C GTCTGTCTGTGGAGATACACCCGGATGCGGAAT 28236 33 100.0 33 ................................. CGCAATCCACCACTATCATAGCTCGGATGAACT 28170 33 93.9 0 ....................A.........G.. | TA [28147] ========== ====== ====== ====== ================================= ===================================== ================== 23 33 98.2 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTATTATACTATCCCTTGTCGTTTATTTGTTATATTGTTGGTTATTAATGTATTATTATCTGTTTGTATCGATTGTTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //