Array 1 375608-376355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSHV010000001.1 Pseudomonas aeruginosa strain PAH8 NODE_1_length_835411_cov_30.579531, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 375608 28 100.0 32 ............................ ATAGAGTTCATCGCTAGATCAAAATTCTCGGC 375668 28 100.0 32 ............................ CGGCTACGCGACCGGCACCAACAGCGCCGCGC 375728 28 100.0 32 ............................ AGCGCCTGGCCGAACTGGATCACCCCGTTCTC 375788 28 100.0 32 ............................ GACGTGTGCAGGATCTCGCCGGCGCCGGCAAT 375848 28 100.0 32 ............................ ACGAACGAACAGTTTTTTCAGGTTTTTCATAG 375908 28 100.0 32 ............................ ACATGCCCGAACACAGGGGCGCCCCATCCGGC 375968 28 100.0 32 ............................ AGAACGAGCCCCGTGTATCGGCTTTGGACTCA 376028 28 100.0 32 ............................ TTTTGGACAGGCCGAGGGGCCGTATCGACGGT 376088 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 376148 28 100.0 32 ............................ TCGATCACAGCAAGCCCTACCTGACGGTCGAT 376208 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 376268 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 376328 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAACAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 68545-69652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSHV010000013.1 Pseudomonas aeruginosa strain PAH8 NODE_13_length_216358_cov_29.975258, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68545 28 100.0 32 ............................ CGACGACGACGCCGCCGTCGAGCACGTCGTAG 68605 28 100.0 32 ............................ AGCGGGCGCTTCTCCAAGGCCTGCCCGGTCAT 68665 28 100.0 32 ............................ GTGGAGGCCGCGTGATGCTCGCGCCGACTCTC 68725 28 100.0 32 ............................ AATAATAATCCGCCGCACTAGCGCCCCGAGCA 68785 28 100.0 32 ............................ ACCATCGCCACCACCAGTTCCACCGCCATCAC 68845 28 100.0 32 ............................ TAGCCAACCAAACACCGTCACAGCCCAAAAAA 68905 28 100.0 32 ............................ AGGGATTTCCCTCGGCCGGTGTGTGCGGCCAG 68965 28 100.0 32 ............................ TGGCGCGACGCCGAGCAGCAATGCCGCGACGG 69025 28 100.0 32 ............................ AAGTACGCTTTGCCTTGGCAATCGCCTCCGCG 69085 28 100.0 32 ............................ GAGGTCCAGGAGCTACGCCGCCAGGCCTATCG 69145 28 100.0 32 ............................ TGTCTCCGGCTAAATGTCCGCCGCCCTGGAAT 69205 28 100.0 32 ............................ ATTGGCTGTTGAAGCTCAGGATCGATAGTCAC 69265 28 100.0 32 ............................ AAGGGAAAGTTCCTCTGCGGCGTCCTGGACAA 69325 28 100.0 32 ............................ GAATCGACCGACGAATACCGCGAGGGCGTCGA 69385 28 100.0 32 ............................ TTCTTCGGCTCGAACAGCGCAATCCAGACTCC 69445 28 100.0 32 ............................ AGTGCGCCATCGTTCGCCAGGAAAAGCTCGCA 69505 28 100.0 32 ............................ GACCCCGCCTCCAGGCCGGAGCCACCTGCCTG 69565 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 69625 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 80247-78177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSHV010000013.1 Pseudomonas aeruginosa strain PAH8 NODE_13_length_216358_cov_29.975258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80246 28 100.0 32 ............................ TAGTAGATCGCTCTCCTTCACATCCTCCTTGC 80186 28 100.0 32 ............................ TCAGGAATCTCTATGTATCTGCTTGGAAAAGA 80126 28 100.0 32 ............................ ACCGCGACGAGGAACGAATTCGCGAGATGGAG 80066 28 100.0 32 ............................ ACCCGCGCCGAGTTCGACAAGTGGAGGGCCTC 80006 28 100.0 33 ............................ ATAGAGCGTTTCGCTATGTGGCGCCGACGCCTC 79945 28 100.0 32 ............................ CACTCGCGGCCGCTGCATGACATTTGGGCGAG 79885 28 100.0 32 ............................ CGGAGAAAGTCACGCGCTTCGAGACGCACCGG 79825 28 100.0 32 ............................ TGAATCTTCTTGTCATCGACCGTGCGGAACTC 79765 28 100.0 32 ............................ ATGAACGCAGCGATAACGGCCGAGCCGTTGAC 79705 28 100.0 32 ............................ TTGCTGACTGCGAGGTCTGGACTGGCCGGAAA 79645 28 100.0 32 ............................ TTGAGCGGTCGAACCATGTCGCCGATGTAGGC 79585 28 100.0 32 ............................ TGGGTGCGGGTGTCGCGTTTCGGCTGCTGCGC 79525 28 100.0 33 ............................ GTAATGCCGGTGCCGGGCAAACTCGCGGATCCA 79464 28 100.0 32 ............................ TGGACGAACACCGGCACGGAAACCGTCTTGCC 79404 28 100.0 32 ............................ TAGAACTTGTCGCCCGCTCCGCACCGCCGAGC 79344 28 100.0 32 ............................ CCTCGGCGAGCCGGCACGCCCCAGGACAGAAC 79284 28 100.0 32 ............................ ATTGCAGCGGCGAACCGCTGCGCCGCCATCAA 79224 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 79164 28 100.0 32 ............................ GTCTGGATGTTCGATGCGATGTCGGCGCTGGC 79104 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 79044 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 78984 28 96.4 32 ...........G................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 78924 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 78864 28 100.0 32 ............................ GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 78804 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 78744 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 78684 28 100.0 32 ............................ AGAATGGCCTCCAGCCCCAGCGAATGGCCTGG 78624 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 78564 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 78504 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 78444 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 78384 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 78324 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 78264 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 78204 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //