Array 1 77877-77548 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOZ01000010.1 Erwinia amylovora CFBP 2585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77876 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 77816 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 77756 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 77696 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 77636 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 77575 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 89446-87340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOZ01000010.1 Erwinia amylovora CFBP 2585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89445 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 89384 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 89323 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 89262 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 89201 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 89140 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 89079 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 89017 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 88956 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 88895 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 88834 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 88773 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 88712 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 88651 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 88590 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 88529 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 88468 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 88407 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 88346 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 88284 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 88223 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 88162 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 88101 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 88040 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 87979 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 87917 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 87856 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 87795 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 87734 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 87673 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 87612 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 87551 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 87490 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 87429 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 87368 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 102579-100353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOZ01000010.1 Erwinia amylovora CFBP 2585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102578 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 102517 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 102456 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 102395 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 102334 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 102273 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 102212 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 102151 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 102090 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 102029 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 101968 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG C [101959] 101906 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 101845 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 101784 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 101723 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 101662 29 100.0 33 ............................. TAAAGGAGCATGCTTATACAACTGACAAAAATC 101600 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 101539 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 101478 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 101417 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 101356 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 101295 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 101234 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 101173 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 101112 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 101051 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 100990 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 100929 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 100868 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 100807 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 100746 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 100685 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 100624 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 100563 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 100502 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 100441 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 100380 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //