Array 1 260922-261925 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUVN01000005.1 Salmonella enterica strain CFSAN071991 CFSAN071991_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260922 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 260983 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 261044 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 261105 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 261166 29 100.0 32 ............................. ACGTTTTAACAGGGTAATATTTACTTAATTAT 261227 29 100.0 32 ............................. GTTACTTTATTATCTCTCGCATAGACCCGGCA 261288 29 100.0 32 ............................. AATATCTATAACGGAGCCGTTTTCATTGAGCG 261349 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 261410 29 100.0 32 ............................. ACAACAACATATTGGTAAATCAGGATACTGGC 261471 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 261532 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 261593 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 261654 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 261715 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 261776 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 261837 29 96.6 32 ............T................ CGTTCATCGGCAGCGTCACGCAATATGAAGAT 261898 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16294-17422 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUVN01000022.1 Salmonella enterica strain CFSAN071991 CFSAN071991_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16294 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 16355 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 16417 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 16478 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 16539 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 16600 29 100.0 32 ............................. ATCTGGAATTGTTGACGGTGGCTGATTTAGCA 16661 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 16722 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 16783 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 16844 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 16905 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 16966 29 100.0 32 ............................. TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 17027 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 17088 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 17149 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 17210 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 17271 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 17332 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17393 29 89.7 0 A...........TC............... | A [17419] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //