Array 1 476474-477721 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQT01000003.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_62_S353 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 476474 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 476535 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 476596 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 476657 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 476718 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 476779 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 476840 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 476901 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 476962 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 477023 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 477084 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 477145 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 477206 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477267 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 477328 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 477389 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 477450 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 477511 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 477572 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 477633 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 477694 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494268-497836 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMQT01000003.1 Salmonella enterica subsp. enterica serovar Corvallis strain SL_62_S353 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494268 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 494329 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 494390 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 494451 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 494512 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 494573 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 494634 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 494695 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 494756 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 494817 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 494878 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 494939 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 495000 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 495061 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 495122 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 495183 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 495244 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 495305 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 495366 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 495427 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 495488 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 495549 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 495610 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 495671 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 495732 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 495793 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 495854 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 495915 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 495976 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 496037 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 496098 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 496159 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 496220 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 496281 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 496342 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 496403 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 496464 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 496525 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 496586 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 496647 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 496708 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 496769 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 496830 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 496891 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 496952 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 497013 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 497074 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 497135 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 497196 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 497257 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 497318 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 497379 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 497440 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 497501 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 497562 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 497623 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 497684 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 497745 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 497807 29 96.6 0 ............T................ | A [497834] ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //