Array 1 11727-10701 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJGXY010000030.1 Campylobacter coli isolate 17-Ref0006-17, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     11726	    36	  94.4	    30	.GG.................................	TCCTTGTTTTTTAATTTATTTTTGTTATAT	
     11660	    36	 100.0	    30	....................................	ATAGTTTATATAACTCCATCAAGTCTTATT	
     11594	    36	 100.0	    30	....................................	AAAATAAGCCCATTTATCTATTAAAAAGCT	
     11528	    36	 100.0	    30	....................................	TTTGTCAAGTTTCAAGCGAAGAAGCAAAGA	
     11462	    36	 100.0	    30	....................................	TAGCTCTTATTGTAGGCTTAAGAATATTAT	
     11396	    36	 100.0	    30	....................................	TTTATTATCACCTTATAACATGTTGATAGT	
     11330	    36	 100.0	    30	....................................	AATAATGATATTGAAGTTATTAATTTAATT	
     11264	    36	 100.0	    30	....................................	CCTAACTTCTCAACTAATGAGAGTTTAGGT	
     11198	    36	 100.0	    30	....................................	TCCATTTATATAAAAATCACATCCCCTATA	
     11132	    36	 100.0	    30	....................................	ATAAATTTATACAAATAAAAGAAAGTTACA	
     11066	    36	 100.0	    30	....................................	AAATTTGCTTTATTTAAATTGTTTTCGCTA	
     11000	    36	 100.0	    30	....................................	AAAGAAACATCAAAAATTCTAGGGGTTCAA	
     10934	    36	 100.0	    30	....................................	TATTTTTTAAATCTATCATATATTGAGTGA	
     10868	    36	 100.0	    30	....................................	TCCAATTAGTAAATATAGCATTAGTGAAGA	
     10802	    36	 100.0	    30	....................................	GTGATGTTTGTAAGATTTTAGAAATACAAG	
     10736	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.7	    30	GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	                              	       

# Left flank :   GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCAGCCATGGTGATGTTTAATCTTTATGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTAGTACCAAAAGAATGTGAAATGTTAGAAAATGAAAGCTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA
# Right flank :  AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTATTTCTAAATTTACTT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:77.78%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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