Array 1 180722-181177 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NBPE01000004.1 Salmonella enterica subsp. houtenae serovar 40:z4,z32:- strain NY_FSL S10-876 NODE_4_length_387156_cov_36.2141_ID_2974, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    180722	    29	 100.0	    32	.............................	CATTGACCATTAGAGTCGCATCATTCGCTCTC	
    180783	    29	 100.0	    32	.............................	AAACTCAGGATTTGTGATAACCCTCGCAAATA	
    180844	    29	 100.0	    32	.............................	CGCATCGTGGAGGCAAGAGAGCGCATGAGCGC	
    180905	    29	 100.0	    32	.............................	GTGTTACCGACTTTCCCTTAATCCACCCCGAG	
    180966	    29	 100.0	    32	.............................	CACACGCCTTTAGAGATTGGCAACAAAATTTT	
    181027	    29	 100.0	    32	.............................	ATTTTGGTCGATTGACGAGACGCGAACGTATC	
    181088	    29	 100.0	    32	.............................	GAAATATCTTGAGAAGCCTGTTCGTGAGATTG	
    181149	    29	  93.1	     0	...........................GT	|                               	
==========	======	======	======	=============================	================================	==================
         8	    29	  99.1	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCATTCTGGCAGCGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA
# Right flank :  TTTTTCACCAGCAGATCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCTGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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