Array 1 68121-67052 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000002.1 Streptomyces sp. MMG1522 P406contig10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 68120 30 90.0 31 .C.........A.................T GGTCCGTGGCGAAGGGTAAGCGCCGCAACTT 68059 30 100.0 31 .............................. AGCTGCTGCGCGGTGACAACAAGACCGGCCG 67998 30 100.0 31 .............................. GCGACGACATGCTGGAGCCGGGCGCCGAGTG 67937 30 96.7 31 .............................C GGCTGCACCCGGGGCAGATGCTGTACCTCAC 67876 30 100.0 31 .............................. GCGCGCCCACGGCATCTTCCGGTCGCGCGCC 67815 30 100.0 31 .............................. CGGACGGCTCCCTGGCGGGGGCTTGACTCGA 67754 30 96.7 31 .............................A CGGGTGCCCGGGTGAGCGGAAGCCGTGTGGT 67693 30 96.7 31 ............................T. TCGGCGCTGCCTGTACCGCGCAGGATGCGGC 67632 30 100.0 33 .............................. CCAAGAGCATCCTGTTCGGCGACTTCTTCGCGG 67569 30 100.0 31 .............................. GCTTCGTCACGACCGCTTGGCTGGTGCAAGT 67508 30 96.7 31 .............................A ATTCCGCCGTCCTTGAAGGCGGGCAGCCCAT 67447 30 100.0 31 .............................. AAGCCGGCGTTCCGGTCGTCATCACCGACGT 67386 30 96.7 31 .............................A AGGGGCTGCTGCGGCAGGCCCTCGACCTGGG 67325 30 96.7 31 .............................T CGCGGCGGCCGACGACCTCCGGGTGTGGGCA 67264 30 96.7 31 .............................A TCAGCGGCAGGGACTCGGGCAGGGTGTACGT 67203 30 100.0 31 .............................. CCGTACGCGCCTTCCAGCGCGCACAGGGGTG 67142 29 90.0 31 ............AT...........-.... ACGACAGTGGTCGGCGCATCTGTACGACGGT 67082 30 80.0 0 ...........C.GG...C..C.......A | T [67067] ========== ====== ====== ====== ============================== ================================= ================== 18 30 96.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACGCCACGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGATGAGGTCGCCGCCGTCAAAGCCCACGTCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGACAGAGCCACGCTCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTTCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGGATGTTCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGACCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCTCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73400-72518 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000002.1 Streptomyces sp. MMG1522 P406contig10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73399 29 100.0 32 ............................. GCTTTCGGGGCGATCCTGGCTTACCGGGCCGT 73338 29 96.6 32 .........A................... AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 73277 29 100.0 32 ............................. ACCCACTGGAGTGCCGACTTCACCGTGGACAC 73216 29 96.6 32 .................T........... TGGAGTGGAAGGCAGCCACCGTTCGTCAGTTC 73155 29 100.0 32 ............................. TCTTCTACGTCACCTCCGACATGACGGCCCTG 73094 29 100.0 33 ............................. ATCCCGGTGAGGACGCAGGCGCAGACAGCGCCG 73032 29 100.0 32 ............................. GCCGCGAGCGCATCGGACGTAACACGCATTCT 72971 29 96.6 32 ..............G.............. CACTTGTTGTCGAGGTACATGTCGTAGCCGTT 72910 29 93.1 32 .C..........................T CGCGCAGGATCAGCAGGGGTTCGTGGCTGGTG 72849 29 100.0 32 ............................. TATGTTTCGGCCACAGCGCCCACCCCGGCGGC 72788 29 100.0 32 ............................. TAAGTCACACCAAGCACACACGAGGAGACCCC 72727 29 100.0 32 ............................. GTATCGCGCGTGAAACGGGCGCGCCATCCGGT 72666 29 96.6 32 .......T..................... GGAATTGCCACTCGTATGCTCGTGGATTACGA 72605 29 100.0 32 ............................. GCCGCCGCCCTGCGGATGCTGCTCCAGGACGG 72544 27 82.8 0 ............--.A.....T...C... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGCGAGCGCGGGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCCGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGATGGGCTGCCGCCAACAGTCCGGGGTGCGAACGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAGGCAGATCCAGGAGGTGCTGACTTCCGCCTACCTGGCAGCGCATTCGAAACTTAAGGCCGCATATGCCCGACTCTCAAGAAGTTCTCCAAAACGACCTCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : TCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGGCAACACCGCAGGTCGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGGCGGGACGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173937-173480 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000124.1 Streptomyces sp. MMG1522 P406contig4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 173936 30 96.7 31 .............................C CTCGCCGACCTCCGGGACGCCAACACCAAGC 173875 30 100.0 31 .............................. CCTCGCCCCGCTCCTCGGCCTGGTGACGCTC 173814 30 93.3 31 ............................AG TCGGGTTGCGCAGCATCCGGGTAATGACAGC 173753 30 93.3 31 ............T................A CCTTGCGCTCCCACGGGCGGCACAGCGGGCA 173692 30 90.0 31 .......TT....................G GGCCCCAGAAAGGTCGGGCAGAGCGCTGTCT 173631 30 96.7 31 ............T................. TCGAGCGTGGTGTCCTGACGTTCCGGGCCGA 173570 30 83.3 31 ...........TGG............T..A GCAGGGGCAGGAAGTCCAGGACTGCGTCGCC 173509 30 70.0 0 ............T.GC.T....CT..GAA. | ========== ====== ====== ====== ============================== =============================== ================== 8 30 90.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : CGACAAGATTCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTGCCGGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCAACGACACTGCCGCACCCACCCCGGACGAGGTCGCGGCCGTCAAAGCCCACATCGCCAACCTCCGTAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACGCCCCTCGTCGGGCAGGCCGGGCTTACCGCACCCCGGGGCCCACGCCTGCGAAAGGCCTGACCGCAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGACATCAGCCGAACCACATGTGACCACACTGCGGCAGGAGGCGAGATATGTCGGCTTCTCAAGAGGTAAGTAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCCGCTCCTGAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGCGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGGAGGTGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGATCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCGA # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6666-6514 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000014.1 Streptomyces sp. MMG1522 P406contig110.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6665 30 96.7 31 .............................A TCCTGCGGGAGACCAGCTACCCGGAGGAGGC 6604 30 100.0 31 .............................. CGGTGCGAAAGCCGAGCTGCGCCCAGACCGG 6543 30 86.7 0 ....AG......................GT | ========== ====== ====== ====== ============================== =============================== ================== 3 30 94.5 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GACAAAATCCCACCCCACATCCCCAGGGCGACAGAATCCCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGTCGCCGCCCAGGCCCGCCCGGGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGCAGCAACGACACCACCGCCCCCACTCCGGATGAGGTCGCCGCCGTCAAAGCCCATATCGCCAACCTCCGCAACCTCCTCAAACCCGTCTAACCCCCAGGCGATGAGTCGTTGCTGGGCAGGACGGCCACACCGCGCCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGACACCAGTGGTGCGCAGAATGACATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTAAAAACCGCCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : CGAGCCACCCGCCGCACCTGCCCCCGGCCCGGGAGCGTCCAGGCGCGGCCCGCCCGAGGCCGCCGCCCTCGCCCCCGGAGCACCGCCCCTACGCTTCCGACGTCCCCGACACCGCCACCCGGAACCCCACCCCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCTCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCCTGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAACGAGCCGACCGGCGTCGTCGTGCCGACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCACCCCACGGGAACTCCCTGCCGTCGTCGCCGCGCGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCGT # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1322-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000131.1 Streptomyces sp. MMG1522 P406contig46.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================= ================== 1321 29 69.0 201 .........A.G.A..T.AAAT...T... ATCGGCATGGGCGCGGTCGCGCTTGCCCCCTCCGTGATCGCCGGCCAACGGGCGCGATTACCTGGCGAGACCAGAACTGTCCACCGGGTGCTGGGATAGCCTTGTCGTCACGGCAGGTGAAAGCCAATGGTCGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACACTTTCCGACTGTAACGCTGCAGGTCAGGAAGC 1091 29 100.0 32 ............................. GCATGCGAGTCACGCGGTAGGAGGCATGTCGG 1030 29 100.0 33 ............................. GGGTCGAGCTGGGTGCGCTGGCAGAGGTGCAGG 968 29 100.0 32 ............................. TGCAACGTCGCAGGTCAGACGCGGTTGAGGGG 907 29 100.0 32 ............................. CCTGTGGCGGAACTGCGGAGGTACCGGAAGTC 846 29 100.0 32 ............................. GCCAACTGCAACACCAGCACGGGTCAGGGCTG 785 29 100.0 32 ............................. AGGTGCGCGTCGGTGTGGGCCTGCCCGGTGTG 724 29 100.0 32 ............................. GGCGAGATGCACAAGGTGACCGTGGACGGCTC 663 29 100.0 32 ............................. TCCCGGTCGGTGATCCGTTCATGCGCGGATCC 602 29 100.0 32 ............................. CGCGCACACCAATTTCGGTGACCTGTCCGGCA 541 29 96.6 32 ....................A........ TGGCTGAGCCCTCGCTCGAGCCGGGCGGCCTG 480 29 96.6 32 ............................G GGGTCGGGTAGGCAACCGGCTTGGCGAGCGGG 419 29 100.0 32 ............................. CAGCCGGGAGTCCTTGGTCGTCTTGACCCCGG 358 29 100.0 32 ............................. TCCCAGTGGGAACAGGGAACCAAGAAGCCGAA 297 29 100.0 32 ............................. CTTCCCGCCCGCGCAGCCGTCGACGACCGTGG 236 29 93.1 32 ........T...........T........ GCCTCGGTGACGTCCTCCGAGCCGTAGAAGGA 175 29 89.7 0 ........A................TT.. | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================= ================== 17 29 96.8 43 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : ACGGGTTCCCCTGGTACGGCCGAGGACGGCGTGGTCCTCCGACACATCTCGGGCAGACGTTCCAGCCCCAGCCCCAGTGCCGGTGCCCTTTACGGAAGTGCGTCCGGTTCCGAAGGACGTTCGGGCGTCGAGGTATCTGGGGGCGGGACGGCTCGCAGAGCTCGCGACGGACCTGCGGCCGCTGCTGGAGCAGACCGCTCGCGCCGGAACGACCACTACTTGGAAGGCGATCCGCCAGCGTCTGCCCGCCCTGGCGCGTCTGCACCGCGACGACGAGAGCGTCCTGCTGTGGCTTGTCGACGACGAACGCGATCAGGGGGATCCTCTGCTGTCAGCCCTGGTCACGGTCGGCGACCGGCAGATGCACCCACGATTCCCCGCCATCGCTGAGCAGCTCGGCGTTACAGCCGGACGCTATCCGACGCAGCAGCGCTCCACCTGGAACTACGAAGTCCTGAAGTCTCATCAGCGCTGGCGCCACCGGAACTGATGCTGAAAGT # Right flank : CACAGCGCGCGGCGTGCCGGTGCGGGCGAGCCCCTGCTCTCTCTCCCCCCCCCCCCGCCCGGGGCCGGGGGGGGGGGGGGGGGGGGTTTTGGCCCCCGTCCCCGGGCCCCGGGGGGGGGGGGGGGGGAGAGAGAGCAGGGGCTCGCC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-1.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4560-2334 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000131.1 Streptomyces sp. MMG1522 P406contig46.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4559 29 100.0 32 ............................. TGGAGGCTGTAGCCCTTGTTCAGCCGGACCTC 4498 29 100.0 32 ............................. CACCGCTCGTACGACCCCGACGCCGCCTCCTT 4437 29 100.0 32 ............................. CGGTACGTCCACCCCGTCGGCACGCACCCCTC 4376 29 100.0 32 ............................. GTCCCGGGACGTCTTGCGCCCGTCGGGGGTCT 4315 29 100.0 32 ............................. CGCAGGCGTCCGCTGGTGGTGTGACGGGCGAG 4254 29 100.0 32 ............................. GTGCGCCAGCTCGTCCGCAACGGGGCGAGCGG 4193 29 100.0 32 ............................. AAGCTCGACAGGACCCTCGACGAGGTGATGAC 4132 29 100.0 32 ............................. CAGCCCGCCGCCCTGGCCTTGAACTACGAGGC 4071 29 100.0 32 ............................. AACGGGCGGCTCGGGGGGTGGTGGGAGGAGGG 4010 29 100.0 32 ............................. ACGGCCTGCTGGTTCTCCGTCAGGTCCACCGG 3949 29 100.0 32 ............................. CAGGACGGCTGGCTGACGCCGGGCAACCCGTC 3888 29 100.0 32 ............................. GGGTCGCGATGTCCGACTCAGCGTCGAAGGCG 3827 29 96.6 32 ............................T GGGGACTTCAGCTCTGCCGAAGCCTTGTCCAT 3766 29 100.0 32 ............................. CCGGACGGGCGGACGTGGGCGAAGTGGGGGCT 3705 29 100.0 32 ............................. CACGACTCCACCCTCCGCATCATCCGGGCCGT 3644 29 100.0 32 ............................. CTTTCGTTAATCGGCGATGGTCTAGCCCACCG 3583 29 100.0 32 ............................. GGCATCGCCGTCAGGGCCTCGTCCATGGCCTA 3522 29 100.0 32 ............................. GGTCGACGGGTGGACGTAGGCGGCGGGCAGGT 3461 29 100.0 32 ............................. CAGCGTCTTCATGGGAAGTAGCTTCCCATGAA 3400 29 100.0 32 ............................. TGCTCGGGCCCGGGGCCACTGCCCTGTGCGAG 3339 29 100.0 32 ............................. GGCGAGCGCCTCAAAGTCATGGTCACCATGCC 3278 29 100.0 32 ............................. AAGCTCAGCAAGGCAGGCAAAGACCTCGCCGA 3217 29 100.0 32 ............................. CGCTACCAGGACGCCGGAGAGATGCACCCGTT 3156 29 100.0 32 ............................. GACCGCGAGGTCGAGGTGGGACCCACCACGGT 3095 29 100.0 32 ............................. GTCCTCGTCGGCGGCCTCGCGTCGCCGACGGA 3034 29 100.0 32 ............................. CCGAATACACCGGCCCCCGCTCCCTCACCGCA 2973 29 100.0 32 ............................. GGCATCGCGTCAGACGTCATCGTCGCCCGGCG 2912 29 100.0 32 ............................. AAGCTCCTCGCCGCGTACGGCGTGACGCACCA 2851 29 100.0 32 ............................. CCGAGCTTCTCCATCACCCGCCACGCGGCCGG 2790 29 100.0 32 ............................. TACGAAGCGATGCCCTCCCAGGCAGACATGGA 2729 29 100.0 32 ............................. TCGACGTCGGGTCAGGTCGCCCGCGTGACGCT 2668 29 100.0 32 ............................. CGCCGCCGTCGCCGCCGTCGCGGCCGAGGAAG 2607 29 100.0 32 ............................. TGCCGCCCATCTCGCGGAAGATGCCCGTCGGC 2546 29 100.0 32 ............................. CGCGTCTGACCTGCGAAGTTGCCGGTTGACGC 2485 29 96.6 32 .........................C... ACCGGGCCGCGCGGCTACAAGCTGGCCGACCT 2424 29 89.7 32 ..............G......G......T GACGCTTCGGCGTGGACGTAGCAGCCGATGTG 2363 29 75.9 0 ..A.......TA.G.......GC.....A | C [2337] ========== ====== ====== ====== ============================= ================================ ================== 37 29 98.9 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TTGCCTTCCCGATGTCATGCACCCCAGCCAGCCACACCAACAGCCGCCGGGCATCCTCCACCCCGCCGGGCAACGGCCCCGCGATCACATTCCGAACCTGCTCAGGCAGCCACTCGTCCCACAACAGCCCTGCCACAGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCCTCCGTATCCCGATCATGCTTCGCCCACACCCGCCGAACAGCACCCTGCAGCCGCCCCCCAAGGCCCGAACAGGCCCCACCCTCATCAGCCATGTCAGATGAATACAGGCAAACAACCGAACAACACGCCCTGATCAGAAAATCTGATGGTTCTTCGATCGACAACGTCACGTCAACCGACAACTCGCCGTAAGATGCGCCGACATAATCCGCGACCTAGCACAACGGGCAGCAGGAAGATGGCGAAATAATCCATATGCCGGAATCAGTGAAAGTGTGTGAGATCTCGGTCCTCCCGCCGTAACGCTGCAGGTCAGGAAGT # Right flank : CCTCCGAGCCGCATCAGTCCGCGTCGCGAAGCGCTCTTGTGCGCAGCGGAGTTGTGAGCCACCTTGGGCGGGTAGAGACGGATCGGGGCACGGCCTTGTGCCGGGGGTTGGGGGCGGCTCTTGTCGAACGGGCGCGTGCGGCTCAGTGGCGGAACAGCGTGGCAAACCGATTTCCGGCGGCGAACAACAGGCCGCCCGGTTCTGAGCGCGATGGATATCGCGATGATCCGACGCTCGCTGAACGGCACGCTCACCGAACTGCAGCGTGCGATCGATCGCTTAGACGTGGCCAAGGCGGCGGATCTCTTCGAGTGGGCCTGGCACCAGGCTTCCCAGGCTCCGCCGAGCGAGACCCGAGAGCAGCGGGCCCAGCTGAGGGATCTCAAGGAAGTGCTGGGTTCACGCCGGTGGCGAGAGGAGGAGCGTCGCCTGGCCGCGCAGGAGCTGACTCCGCGGCCAGTGGGAGGCCCGCCTTCGCCTGGTCGGAAAGCCGCGAAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 14190-14889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000131.1 Streptomyces sp. MMG1522 P406contig46.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14190 29 100.0 32 ............................. TCGAAATCGCCGCCACCAGCGCCTTTGTCGTC 14251 29 100.0 32 ............................. GACTGCCTACGGGCCGGGCGGCGCATGGGTCA 14312 29 100.0 32 ............................. AGATCGACGGCACCGAACTCGGCATGACCTAC 14373 29 100.0 32 ............................. AGCTAGGAGGCCCGTCGTGGGCGACTCTGCGA 14434 29 100.0 32 ............................. TCAAAGCTGGCAGGCGTTTCCGGAGAGGCTGT 14495 29 100.0 32 ............................. GCCGCCGCGTACGGGGCGCTGGCCGGGGCCGC 14556 29 100.0 32 ............................. CTGTCCGGCCGCCATGGGCCGGGCCAGGAACA 14617 29 100.0 32 ............................. CTCGGCCCCGCCGTCGCATGGGAGGACCCGTT 14678 29 96.6 32 ....................A........ GCCCTCGTGAAGGCACTGGAGATCGTCCAGGA 14739 29 100.0 32 ............................. GTGATGGCCGTGCCCTGGGACCGGCCCAACTT 14800 29 100.0 32 ............................. ACGACGGCCCCAGTCCGGTATCTCACCTCCGG 14861 29 96.6 0 ....C........................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAGCGACAGAGGCCTGCATGTGGCGTCCGGAGTGAACTACGGAACGGACGAGCACGAAGCAGCAATCTGGTGACCGTGATCGTCCTCACCAACTGCCCTCCAGGCCTGCGAGGCTTCCTCACCAGATGGCTCCTGGAAATCTCCGCCGGCGTGTTCATCGGCAATCCTTCATCCCGCATCCGAGACGTGCTGTGGGACGAAGTCCAGCAGCACGCCGGACAAGGCCGTGCGCTTCTCGCCCACACGACCAACAACGAGCAAGGCTTTACGTTCCGTACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGCCTCACGTTGATCCAGCGCCCCATCGACAGCAAGGGCGCAACGAGCAGTGCGAAGAAGCCAGGGTGGAGCGCAGCATCCAAGCGCCGCCGATTCGGAAAGAGATAGGCGAAATGTCCGCTATCTCGGAATCGGTGAAAGTGTTCGAGGAACTGATGAGCCCACGGTAAAGCTGTAGGTCATCAAGT # Right flank : CGAGCCGCTTAAGTACGAGGGCCAGACCGAAGACTGTTCCCCTGAGCCACGAGGTGCGCTGCTCGAGTCGTCGTCCGCCATGCGAGCATGAGGGATCGAGCACCCGGTCGTCTTCGAACGACAACCCGGGCACCTCCACCCGCTCCAGCGACCGGAGTTTGGCGAGCTGCTGACGTACGCTCGGCCGGGCGGTCCCGTGCAGATCTCCGTGATGTTCCGCCGCGTGCGCGGCGACCAGCACATCCTCAACGTGCTTGAAGTCCTTGCACCGTGACCAGCTCGCCCTGCGCATCCACGACGGCGCGTTCTCCTCGATGGACCTCGCCGCCCGCGCACCGGCGAGCTGCTGTCCACCGTGAAATTCATAGTGCAGCCCCTCGCCGGAGACGGGCGCGCTCGCGCCTCCAGTTTCAGTTCGCAGCCGTCCGGTGAACCGGGGGCCTCGCTCGTAGGTTCGGAGAACGGCCCGGCGGCTTTGGAGGATCACGGGGCGGAGAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3460-5300 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000174.1 Streptomyces sp. MMG1522 P406contig84.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3460 29 100.0 36 ............................. AACATGCCGACCACCATCCGCAACTGCCGCAACCGC 3525 29 100.0 36 ............................. GCGCGTCGTCCCGGGTCAAGGCCCGTCTGGTCTCCG 3590 29 100.0 36 ............................. CGCCGCATGCCGGACGTCACGCCCATCCGGGGGGAC 3655 29 100.0 34 ............................. CCTGCCTCCTCGACCCCGAAACGCTGGCGTGGGT 3718 29 100.0 36 ............................. CCGACCGGTGCGGCGGCCTCGTGGAGCAGGTCCCAC 3783 29 100.0 38 ............................. ATGGTGACCGAGCGCCGACCGAGCCACAGCGCGCCCAT 3850 29 100.0 26 ............................. GTCGGGACGGCCGGTGGTGGCCGCGC Deletion [3905] 3905 29 100.0 36 ............................. GCGGCCTGCGTGCAGCGGACGAGGGCCGCGTAGGCG 3970 29 100.0 36 ............................. AGGTTGACCAGGCCGGACTCCTGCATCGCCGTCATG 4035 29 100.0 36 ............................. CCAACCGCACGGCGGTGGCCGGCCGATGAAGACCCG 4100 29 100.0 36 ............................. CCGCTGAGCACGGCGTTGATGCTGGCTTCGGTCCAC 4165 29 100.0 35 ............................. CGGCGTATGCCGAGGTGCTGGGCGGCCAGGTCCGT 4229 29 100.0 35 ............................. CTGGACCCGCTCGCGGGCGCGCGCGAAGTTCAGAA 4293 29 100.0 37 ............................. CGCATCTGGTAGAGCGTCGCCATGTCGAGCGGGTGGT 4359 29 100.0 36 ............................. ACGACCCCTTCAAAGGCTCCGAGGACGCCGGTTCCC 4424 29 100.0 37 ............................. GACCATTCCTCTTCCCCGTCGCCGGCGGGAAGGACCG 4490 29 96.6 36 ............................T GCGTCCAGCACCTTGACCACTTCGCCCACGGACCGG 4555 29 96.6 36 ............................T GCGTCCAGCACCTTGACCACTTCGCCCACGGACCGG 4620 29 100.0 36 ............................. AGAGGGCCGAGGGACAGTTCGAGAGCGTATCCGGAG 4685 29 100.0 36 ............................. CTGACGTGCCAGTGGACATGGGCCAGGTCGAAGCAG 4750 29 100.0 36 ............................. ATGAGGCCGACCTCGTGCTGACGGAGCTGGCGACCA 4815 29 100.0 37 ............................. GGGCGCTGCTCGTACGTCTCGCCCTCCACCTCCCAGT 4881 29 100.0 36 ............................. GGGTGACCGGGCAGAATGAGGCACACCCCAACTCGG 4946 29 100.0 36 ............................. CCGGCGTACAGGGCGACGTGGTAGATGAAGCCGCTG 5011 29 100.0 36 ............................. ATGACCCGGAGCTTCGGTTCGGGGCCGGGTCGGGGA 5076 29 100.0 37 ............................. GCCATCACGTCAGGGCCGCCGACCGGGCGGCGCAGCA 5142 29 96.6 36 .........................T... AGGAGCTGGCCGTCGAGGGGGCCGCCGACGAGCTGT 5207 29 100.0 36 ............................. CAACAACGCAGGGGCGAAGCAGAAGCAATGGCGGAG 5272 29 96.6 0 ............G................ | ========== ====== ====== ====== ============================= ====================================== ================== 29 29 99.5 36 GTCGTCATCAGCCCAGGAGGGTTCGCAAC # Left flank : GAAGAACTCGCCATCACCGTTTACCATCGCACCCTAAAACGACAAGTCAGCTACGAAGAACTCATCCACTTAGAAGCGCTAAAAATTGTTCGCCTCTGCCTTGAAGGTGCAACATACAAGCCATTCAAGCCATGGTGGTGAAAACATATCTTTGTCGTCCTCGTATACGACACCGCAACCGAACGCAATCCGAAAGTGCTGAAAACGTGCCGCCAATACCTTCACTGGACGCAACGCAGCGTATTCCAAGGTGAACTATCCACCGCGCAATACAGGCACCTACTGCACTCCCTTGAAACAGCCATTGACGCTGACTACGACAGCATCGTCACCTACACCACCCGCTCACCCAGCATGATCGAGACGAACACGCTCGGAGTATCTCTCGGAGGGTCAGGAGACATCCTCTGACCAGCCCTGATACACCACCGCCCACCTGCTGCAAAAAAGCCTCGCGTGTTACTGAAAACCAGGGATCTCACCTGCTGCTTTACACTCGG # Right flank : CGCGCGGAGGATGCCGCCACAGTCGACCTGGTGAGCCGTGTGAGTGGGCGTGTTACTGATCGTTTCAGAATGAGTTCGGCGTAGAGGCTTGGCGGGGTGTCCGAGCGGCAGATGGAACTCGCCTTCGGGCAGGGGAGGCACCCGGACGCCGACCGGATCGAGCGGCGCCTCCTGGACGGCGTCGACCCGCCGGCCGCGCGGCGGGCGACGGCGCTCGGGCAGCCGATCGAGGAGATCGAGGCCCGCAACCAGACGCCGCTGCTCGCCCTGGACCTCACCTTCCGCCCGCAGGCTTCCCTGACCGTGCTGTGGGCGCTGGGCGACGCCCATACGCGCCGGGTCATCGAGGGGGCACACGAGCGGGCCGTCGCCCACGGCCGCCGCGCCCCGGCCCCCGGCCAGATCTTCTATACCGCCGACTTCCCCGAACCCGGTCGGTGGTGGATCGCCGGCACCGGCGGCAAGCCGCCGCGGGAGTCGTCCCGCTACGAGCGGGCCCG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 4535-5296 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000004.1 Streptomyces sp. MMG1522 P406contig101.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4535 30 100.0 31 .............................. TCACGGTCAGCTACCCGCACGCGAAGCTGTC 4596 30 100.0 31 .............................. TCACGGTCAGCTACCCGCACGCGAAGCTGTC 4657 30 100.0 31 .............................. CCGCGAGGTCGGTGTACTGCGGGGTGGGGTT 4718 30 96.7 31 ............................T. CCAGCTCGACCAGGATCAGCCGCTCGACCAG 4779 30 96.7 31 .............................C AGTCAAGCAGCGGTCCGCCTTGCCCAGGACG 4840 30 93.3 31 ..................A..........T GTGCGACATTAATAACGGGATCTTGCTCGGA 4901 30 93.3 31 .....................A.......C GTGCCGAGGCCGGCGTGCGCTGTGATCTCGC 4962 30 93.3 31 ............................TC CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 5023 30 93.3 31 ...........A.................A GCGCGTCGCCGTACATGGCCAGGATGACCGC 5084 30 96.7 31 .............................C AGGTCACGGGGGTTGTGCTCCTGTCGGGGAT 5145 30 96.7 31 .............................C AGGTCACGGGGGTTGTGCTCCTGTCGGGGAT 5206 30 96.7 31 .............................A GGTCCTGCCAGTCGGTGAGGGGCCGGACTTG 5267 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== =============================== ================== 13 30 94.9 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : GCCAGCGCCTCCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGGACCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGTCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGGAGACCGCCATACGGCCTCGAAGGAATAGCCGCACCCCAAGCGCACACCATCAGCCTCCGCCACCCCTCAAACCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGTAGGCACACCACACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGGTGGTGGGCAGAATGGCATCAGCCGAACCACACCTATGAGCACTTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAACCACCTCCCCGCCACCTAAACCCGCAGGTCACGAACT # Right flank : GCGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACACGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCGCGGGTGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAGCAC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8786-9120 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDF01000004.1 Streptomyces sp. MMG1522 P406contig101.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8786 30 96.7 31 .............................A CGTCGATCGCGGGGCTCGCGCGCTGGGCCGG 8847 30 100.0 31 .............................. TTCGGGTTCCCTCGGTCTCCAGCACGATCGG 8908 30 100.0 31 .............................. CGCCGTTGTCGATGCTGTCACGCAGGGCTGC 8969 30 96.7 31 ......G....................... ACGGGCTGATCGATACCGCCCCGCGCCGCCA 9030 30 96.7 31 .............................T GGAGATCGGGCGGAAGCGCGTCATGGTGGAG 9091 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGTAAAAACCGCCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : AAGTCGACGCACTGGAAGTAGCTGGGGTACGTCGTGGCCCCCCAGCACGCGGGTTCCCCCGCCACAGCGGACGGCCGCAGGCAGGGCAGGCCCCGCCGTGCGCGGCGGAGGCTGCCCCTCGCCGCCGCCCACGAACGGGACCGGCGGTCGTCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTACCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCACGACGTCCTCCTCGGATCGCGCCACCCGCAGGGGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //