Array 1 83400-84359 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021516.1 Neisseria meningitidis strain 14-563 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 83400 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 83466 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 83532 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 83598 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 83664 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 83730 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 83796 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 83862 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 83928 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 83994 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 84060 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 84126 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 84192 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 84258 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 84324 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //