Array 1 53566-54019 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQO01000025.1 Salmonella enterica subsp. enterica strain 93_16 NODE_25_length_54045_cov_32.231_ID_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53566 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 53627 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 53688 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 53749 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 53810 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 53871 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 53932 29 100.0 30 ............................. AAAAACAGAAGAACGGCAGCGGCACCTCAA 53991 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : CGTCAGCGCGGTATTGAGGCCGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65576-63978 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQO01000019.1 Salmonella enterica subsp. enterica strain 93_16 NODE_19_length_82644_cov_29.9628_ID_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65575 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 65514 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 65453 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 65392 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 65331 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 65270 29 100.0 33 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGTG 65208 29 93.1 32 TC........................... GCGCGCCAATAATTTTATTGACGATTTCATCA 65147 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 65086 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 65025 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64964 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64903 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64842 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64781 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 64720 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64659 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64598 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64537 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64434 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64373 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64312 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64251 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64190 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64129 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64068 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64007 29 96.6 0 A............................ | A [63980] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.2 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82599-81833 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQO01000019.1 Salmonella enterica subsp. enterica strain 93_16 NODE_19_length_82644_cov_29.9628_ID_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 82598 29 100.0 36 ............................. AAAAAACAGGAAGAACGGGCAAAGCGGCACCTCGAA 82533 29 96.6 33 ............................C GCGTCAGCGCGGTATTGAGGCCGGGGACCGCCC C [82523] 82470 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82409 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82348 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82287 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82226 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82165 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82104 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 82043 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81982 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81921 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81860 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ==================================== ================== 13 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //