Array 1 25746-27334 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISP01000034.1 Vibrio cholerae strain IDH06781 scaffold00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25746 28 100.0 32 ............................ AATAGCCGCCAAAAACATCTGTTTTGCTTAAT 25806 28 100.0 32 ............................ ATGCTTTTTAAAGGCTTCTTCGACAAAGGCAA 25866 28 100.0 32 ............................ TGACTCCTGTGATTTCATAACCATCACGCTCT 25926 28 100.0 32 ............................ TCATCAACAAACACTACTCGCGTTGGTACTGA 25986 28 100.0 32 ............................ GTTTTGAGTAGACTGATAGAATTTGCTTTGCC 26046 28 100.0 32 ............................ GTTATCCCAAATACGAGATGCGATATTGTTGG 26106 28 100.0 32 ............................ ATTGTAACCGATCATGTGAAGTTCTACTCTGA 26166 28 100.0 32 ............................ ATGATTTGGAAGCAGGTTGTTTCATCCGATTG 26226 28 100.0 32 ............................ ATAAGACGGATGACGTTTACGCCATGAGTCGT 26286 28 100.0 32 ............................ GCACGCTTTGTACGCCGAGTCGAGCCACTGGT 26346 28 100.0 32 ............................ TCGATGCCGTCGTTTTCGTCATCCTCGACTAA 26406 28 100.0 32 ............................ CATAACCTGCGCTTTTGTGCCTTCAGGTGTAT 26466 28 100.0 33 ............................ AAATCTCGATAACTTCAACGCTGTTCGGATCAC 26527 28 100.0 31 ............................ AGAACGAACGCGACTCGCTCTAGTATTATTG 26586 28 100.0 32 ............................ CCTATGCCCGATAAGACAAAGAAAGGTAACGT 26646 28 100.0 32 ............................ TCCAGCGGCTTACCTTGCATCTTGCGAGCCGC 26706 28 100.0 32 ............................ AAGCCGTGAGAGTCTTTCTTGATAGTGATTTT 26766 28 100.0 32 ............................ TGCACGAAATAGTAAATGAAGCATTGACCAAT 26826 28 100.0 32 ............................ ATTGGCGTTAAATAGTGGGTTCATTATTTTTC 26886 28 100.0 32 ............................ TGTAGACGCATGTTCAGTTTAACGCGGTATGG 26946 28 100.0 32 ............................ GTTTTTAAATTGCCCTTCGAGTTCGCTTTTTT 27006 28 100.0 32 ............................ TCGCTTACTTTCATTCCAGTTACTTCGTAGAT 27066 28 100.0 32 ............................ TTTTTCCCACCCCATTTGCTCGAAAGTTCTTA 27126 28 100.0 32 ............................ AGAACGAACGCGACTCGCTCTAGTATTATTTG 27186 28 100.0 32 ............................ CCTATGCCCGATAAGACAAAGAAAGGTAACGT 27246 28 100.0 32 ............................ AATCTCGATAACTTCAACGCTGTTCGGATCAC 27306 28 92.9 0 ......................G.A... | T [27326] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : ATCCTTATATATCTTATGGTTGAAGCTCTCAAAGGTTGAGGGTTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCTCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACTAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1949-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_SISP01000055.1 Vibrio cholerae strain IDH06781 scaffold00055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1948 28 100.0 32 ............................ TCTTATCGCTGGTGGACTCGCTTTAGAGCAAG 1888 28 100.0 32 ............................ GTTCTTGTAAATCGCAACGCCGTGCGCTTCTG 1828 28 100.0 32 ............................ TCAGAAATAAATAGCGGGCACTTGGTATTCAA 1768 28 100.0 32 ............................ TGATAAAGTTTCTGCTGACTCATTTCGCCATT 1708 28 100.0 32 ............................ AAACGTTGAGCACTTCTCAAATGAGATAGAGT 1648 28 100.0 32 ............................ AATGATGAGGAACCGACTGGTTGCGCGAGTGG 1588 28 100.0 32 ............................ GATAAAGACGATATTCAGACCAAAGTTTTTAA 1528 28 100.0 32 ............................ TGAATGAAGTAAAGGCGTGTATGTCATCTGGA 1468 28 100.0 32 ............................ TTGCTTGATGGTGAAGTAACCGCGATCGATAA 1408 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 1348 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 1288 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 1228 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 1168 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 1108 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 1048 28 100.0 33 ............................ ATTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 987 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 927 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 867 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 807 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 747 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 687 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 627 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 567 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 507 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 447 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 387 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 326 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 266 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 206 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 146 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 86 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 26 26 82.1 0 ..........AT.............T-- | ========== ====== ====== ====== ============================ ================================= ================== 33 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : T # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //