Array 1 1763-2034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGV01000242.1 Leptospira alexanderi strain 56640 Contig242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1763 29 100.0 32 ............................. GACGCGATGAGGCGGCACCTGAACCGGAAAGA 1824 29 100.0 32 ............................. GACACTGCGGCGAACGCAAAAGGAGCAGAATA 1885 29 100.0 32 ............................. TATTTTTCAATGATTATCTTTATGGATTCAGG 1946 29 89.7 32 .............G....GG......... ATGCTCCTGCAGGAGGGGAAGGCAATCCTTCT 2007 28 82.8 0 ............C.....GG......-T. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 CTATTCTCCACATACGTGAAGTTGAACCG # Left flank : TAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGGGTGAAGACCTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTTTTTGTCGCTTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAGGGTTACGGTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCGAAACGCGATCAGAAAGAAGTTATGAGTATTTCCGATTTTTCTATGGTCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAGACTCCCTTCTTTTAGAAGCAGATGATCCCTAATGAATCGAATGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : GAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTAATTCCTATCCCCTAACATCTTGAAACACATGCGTGGGGTTGAATGGAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTGATTCCTAACCACTAACATCTTGAAACACA # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCTCCACATACGTGAAGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 8813-11949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGV01000216.1 Leptospira alexanderi strain 56640 Contig216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8813 29 100.0 32 ............................. CGCCTTCCCCCTCTCTGATAATGCAAAACCAA 8874 29 100.0 32 ............................. GAAACACTGGTGACGGAAAAATCAACGTCTCA 8935 29 100.0 32 ............................. TCGGCGGGTATACCGTCGAATTCCCAGATCTC 8996 29 100.0 32 ............................. TGTTGCGAACGTAACACGAGAAATCGCCTGCC 9057 29 100.0 32 ............................. CATTGTATATCAACCCTGCATGTATGGAAAAA 9118 29 100.0 31 ............................. ATGGATCGGAATCGCCAACTTGTTAAGCGAA 9178 29 100.0 32 ............................. CCTCTTGCGTCTCCGTGAAGCCAGACGACTTG 9239 29 100.0 32 ............................. GCTCATTTGAATAATACAATCGCCCAAGCGCT 9300 29 100.0 32 ............................. CGTTGGCGGGAGCCAATGCAAAATCAAACTTC 9361 29 100.0 32 ............................. TCGAGTCGGGCGGAACGCATCCACCGGAAACT 9422 29 100.0 32 ............................. TATCCGATTACAATTACGTTCAAGCCCGTTGC 9483 29 100.0 32 ............................. GCGTCTTCCAAGCCCGACTTGTAAACGAGTGC 9544 29 100.0 32 ............................. GATCCGAATATTCTACGGTAAACGAAAGCCAG 9605 29 100.0 32 ............................. TACAGAAGGACCGTTAAATTTTTTTACATTTT 9666 29 100.0 32 ............................. GGTGAGTTGAAAAATGGTTCTCAGACCGAAGG 9727 29 100.0 32 ............................. GAAAAGCTGGTAGGACTGTCCGCCGGTGTCGT 9788 29 100.0 32 ............................. AAATCGACAACTGGTTACGAAACCAGGTTTCT 9849 29 100.0 32 ............................. GAGGTATTTAATGGAACTCTGTTTAACTTTTA 9910 29 100.0 32 ............................. TCTTCTTGAGTGTGCCTTGGTGTTTTAATCAA 9971 29 100.0 32 ............................. ACCAATCCAATTAATCAATGGTTCTTAACTGA 10032 29 100.0 31 ............................. TGGCCCCTTTCGGGGCTTTGAGTGTAATGAG 10092 29 100.0 32 ............................. TTTTCCCGATCCAAGACGCGCCAAATTCGAAG 10153 29 100.0 32 ............................. CAACGCCTTCTGGCATTTACAGGCGGAGTTGT 10214 29 100.0 32 ............................. CAAAGTTTCTATCACTCCGTAGCCGATTCCAT 10275 29 100.0 32 ............................. ACGACCCTGAACCCACCATTTGCGTCCTCGAT 10336 29 100.0 32 ............................. TAGTCCCGGGCCACACGACCAAACGTAAACGC 10397 29 100.0 32 ............................. TAGGGCGGCCTAGGTAGTGGCGGCCGGTTAGT 10458 29 100.0 32 ............................. AAGTCCTTGTGGAATCGTTTGATTTACTCCGT 10519 29 100.0 32 ............................. ACGATTCACCAGCTGACTGGAATCCATCTATC 10580 29 100.0 32 ............................. CGCGGTCCGTCCGGGAATTGCATTTTTACAAA 10641 29 100.0 32 ............................. TTACGGAGGATGTAACTCATCGTTTCGTAACG 10702 29 100.0 32 ............................. AACTAAAGGAGAAACCAAAATGAATGAGGTTA 10763 29 100.0 32 ............................. CCATTTGAAGTTCTTCCAGTTCCAGGATTTCC 10824 29 100.0 32 ............................. CAACGACTGCAAGAATTATCCTCAAAGGATGA 10885 29 100.0 32 ............................. GAGGGAAAGAAATTTTTCAACCTTGAGATCAG 10946 29 96.6 31 ............................T CTCCATGCCTCCGGACCTTTCTGCTCGTGTT 11006 29 100.0 32 ............................. ACTATCACGATATCACTTCGAAGGCTTATGGG 11067 29 100.0 32 ............................. GAGACAGATTCGAAGGAAACTTCAAAGACGAC 11128 29 100.0 32 ............................. GAAGCTGGGGTTACATATCAATAAACTATATA 11189 29 100.0 32 ............................. GGAAGTTTGTTTCGGGACCATAAAATCGGAAA 11250 29 100.0 32 ............................. CCCGATCCCTTTCCCTTCAGCAGTTCGTAAAA 11311 29 100.0 32 ............................. TTAAATTTTGTTCTGTTTCAAGACCGAGATAT 11372 29 100.0 32 ............................. GAAGAAGTTTAGTAAAATCAATCATAGATCTT 11433 29 100.0 32 ............................. TGAGGTTAGAAAAATGGAAACCACTTTACCAT 11494 29 100.0 32 ............................. AGAAGAAATAACGGCCATTACTTCCGGTTCCT 11555 29 100.0 32 ............................. TCTTCAGTTGATTACTAAACAAGAATTAAAAG 11616 29 100.0 32 ............................. AGAAATGACCAAATAACGAAAGCGACAAATCC 11677 29 100.0 32 ............................. GCCTCGGAAAGGGATTGAAGGGCGTGGGGGAT 11738 29 100.0 32 ............................. TTTATATATATTTTAATTCCATAGAATTCACT 11799 29 100.0 32 ............................. TGAATAATCGAGCAAATGCGGACAATAACATT 11860 29 100.0 32 ............................. GAGACACCGGTGACGGAAAAATCGATGTTTCT 11921 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 52 29 99.9 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCTCGTTTGCTCCAATCTATTTATGACCTTCGCTTGGTATGGTCATTTGAAGTTTTTTCACGGATGGAATCTTCCTTTAACAATTTTACTCAGCTGGGGAATCGCACTTTTCGAATATGTCTTGATGGTTCCCGCCAATCGAATCGGCTACGGAGAGGAAGGTTACAGCGCCTTTCAACTTAAAATCCTACAAGAGATCATCACTATCTCCATTTTCATCTTATTTGCTTCCTTGATTTTAAAGGAAAAGATCAGATGGAATCATGTGGTGAGTTTCTTTTTAATTTTAGCGGCGGTTGGGTTTGCGTTCTACGATAAAACTCCCGCAGAAATATAATTCAGCGATTCACTAATTGGTTTTCTTTCAAAGTATGTCAAATTGAAAAAGGCTTGATCTCGGAATTCAGTCCGCCGATATCATCGGCAAGTTCTGCAAAATACAACCAATTGGGCAATTTTATCTTGTCGAAATTACAGAAACTACTAAACTGATCTTTAGC # Right flank : ATAGGAGAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12-1564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQGV01000049.1 Leptospira alexanderi strain 56640 Contig049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 ............................. ATAGGAGAGATGGCAGTGGTATTTCCCCTTTC 73 29 100.0 32 ............................. ATTTTGGGAATGCAAAATGCAGGTTTGTTTTT 134 29 100.0 31 ............................. GTTAGACATTTGCCCTTCCCACGTTTTGGAA 194 29 100.0 32 ............................. AAGAGAAAAAGGTAGGATCGTGTCGTGCCTGA 255 29 100.0 33 ............................. AAATGAATCTTTGGAAAACGCTGTGACGTTAGG 317 29 100.0 32 ............................. AATCGTCTGGGTTCGTTAGAACTGAGTAAGGA 378 29 100.0 32 ............................. AAGGTCTTCGAAGGATCGATAGGTCAAAATAT 439 29 100.0 32 ............................. TTGTAGGACGAGTTGCAGATGACTTAGCTTTA 500 29 100.0 32 ............................. AACGATAGGATCTTGTGTGTAGTTTCCATCAA 561 29 100.0 32 ............................. CGGAATATAAAGATCGGAAACGGTGCAGTGAT 622 29 100.0 32 ............................. AAAAATTTCGACGTGGTCGCTACGCACTCGAT 683 29 100.0 32 ............................. AACTGACGTGTATCGTTATCCCGAGCGGAAAA 744 29 100.0 32 ............................. ATCGTAATTGAATGCGGTCGAATTGCGCAACC 805 29 100.0 32 ............................. AAGAATTAGAAAAGCGGAATATAAAGATCGGA 866 29 100.0 32 ............................. AATGGAGCAGTAGAATTGCACTGGCATCAATT 927 29 100.0 32 ............................. AGGCAGAAGCGCATAAAATTTTCAAATTGACC 988 29 100.0 32 ............................. CAGAGAATCATAGACAAGTATCGGAACAAGAA 1049 29 100.0 32 ............................. AGTACCGTTGTTTCATCGGATACAGAGAGGGC 1110 29 100.0 32 ............................. CGGAATATAAAGATCGGAAACGGTGCAGTGAT 1171 29 100.0 32 ............................. GCTGTTCACAGGAATCGCATAAACCTTTTGCT 1232 29 100.0 32 ............................. CGGCCCAGTGGTCTCGTTTTCGCATGGTTGTC 1293 29 100.0 32 ............................. GTGGGACTAGGCCGCCCTACCCTGCCCAGTTC 1354 29 100.0 32 ............................. AGGAGAATGAGGAGATACGTCCTCATCGGGTC 1415 29 100.0 31 ............................. ACCAAATCGGAAAAATGGGAGCACTAAAGAC 1475 29 100.0 32 ............................. TGAATAATCGAGCAAATGCGGACAATAACATT 1536 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 100.0 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCGATGTTTCTC # Right flank : GTTTGCAATCACGTTTAACGCTACCGGCACCTTCTTTTCCCCACACATGGGGTTAAATGGAAAACAGGATGGATTTTGACTTAAAACCCTAACTACTAATTCCTAATAACTAACATCTTGAAACCCACACGTGGGGTTGAATGGAAAACAGGATGGATTTTGACTTAAAACCCTAACCACTAATTCCTAATAACTAACATCTTGAAACCCACACGTGGGGTTAAATGGAAAACAGGATAGATTTTGACTTAAAACCCTAACCACTGACATCTAATATGCTTTTGTTTATAAGAATTTCCGAATCCCTTCCGCAAGAGTTTTTCCGTCCGTCCCCCCGGGAAAGGTAGCAAGAATTCTACTTTGATCATCTAGGACATACAGAAAAATGGTATGGTCCACGGTATAACCGTCTTTCCATTGAGGAACGCTTACCTTTTTCGAAACCACGCCGAATTCATTCTGGAGTAAATCAAGCTTCGTTTTTTCTCCAGTCAAAGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //