Array 1 84891-84200 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000001.1 Clostridioides difficile strain FD045 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 84890 29 100.0 36 ............................. CTTTATAAGCTTTATACCTGTTTTTTCACCGATTCC 84825 29 100.0 38 ............................. CTCTTACGCTTTTTCAATCACTTTTTTCCTTGCTAAAA 84758 29 100.0 37 ............................. TAAAAAACATGTATTTGATTTTTATACGATTCTCCAC 84692 29 100.0 37 ............................. TGCGGTATATTGGAATTGAACAGGATGATTTAAACAA 84626 29 100.0 36 ............................. GATGTAACCGCACAGATATTCTGGCTAAAGAATCGT 84561 29 100.0 37 ............................. GTTAATTTAGAAGTGCTATCAGAAATAACAGGTAAAA 84495 29 100.0 37 ............................. AGCAACTAGAGTTGATAAAATTAATTTAATAGGAATA 84429 29 100.0 39 ............................. ACAAGATTAATAAAAATAGTGGAGCTATAGAATTATCAA 84361 29 96.6 36 ............................G CAGCTAGAACTTTCAGCAACTGTGCGAGGTGTGTCT 84296 29 96.6 39 ............................G TTAGAAACCTTTCCGTCTAATAATAGTGCTAGATATTTG 84228 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ======================================= ================== 11 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATTTAAACTATGCTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCACTGTATATAGATTACATTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATATGATAAGTGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTGGGG # Right flank : TTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAGTATAGAAATCTTATCACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTATATAATTACATATTTTTTCTGATTAAATAATGTGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCTAATCTTCTTATTTAATAAACTCATTTCTATATCTTCAAGTCCTATTAAATATTGATAAAATTTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAACTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTATAAATTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : GTTTTATATTAACTATATGGAATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 193591-192641 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000001.1 Clostridioides difficile strain FD045 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 193590 29 100.0 36 ............................. ATCTCTCTTTAGATAAATTAGTAATTACTTTCGCAT 193525 29 100.0 38 ............................. GCATAAATTTCACTTTTATCAAATAAAACTCTCTCAAA 193458 29 100.0 37 ............................. ATTAAATACATTTATTCTTTCATAGTTTGATTTTACT 193392 29 100.0 36 ............................. CTGATAAAACTTTATACAAGAGGGCTTATTTGATTG 193327 29 100.0 37 ............................. GGGCTAAAAGAAAAAATAGAGAAAAATATATCTGAAC 193261 29 100.0 37 ............................. AACAATAGGCTACTGGCTCGGAATGAATTTTTTTTCA 193195 29 100.0 36 ............................. CTGATTTTATGCAATTATATATTTCTCCAGTTCTCT 193130 29 100.0 36 ............................. TATAAATACAACAACCACACTCTGCATCACATTTAA 193065 29 100.0 37 ............................. GGAATCCCTTGGAAGGCAAAGTCAAAAATAAACATTC 192999 29 100.0 37 ............................. ATTGGTCTTGCAATTGGTGGTGCCTATTTGGTTTGGA 192933 29 100.0 38 ............................. AAAATCATGATTATGTTCTAAATAGTAATCAAGAGATT 192866 29 100.0 37 ............................. CTAAAATATCTTTCAACCTTTAACATTTCAGCCCCCT 192800 29 96.6 36 ...............A............. CCTCTCAAAGAAGTAACAGGTGAAGAACCTTCTTAA 192735 29 93.1 37 ...............A............T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 192669 29 69.0 0 ......C........AAAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 97.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTATCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAACATACTAATGATAAATGTTTATCATTAGTATCTGTATATGCATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 52485-52709 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000013.1 Clostridioides difficile strain FD045 sequence13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 52485 29 100.0 37 ............................. GTTATTTGGCGAGGGAGACCAACTCGAACTGGTTGGT 52551 29 100.0 36 ............................. ATTATTACTTAACATAATCCTCGCAGTTCTAAGAAT 52616 29 100.0 36 ............................. TGTAACTTTTCCTTTTGACGCTTTCCCTGTGTCTTC 52681 29 96.6 0 ...................T......... | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 99.2 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGATGAATATACATGGATAATTTTTTACAAGGTATACTAGCGAGTCTATCTGCTAGTTTAATAGTCTATATAACTAGCAAGTTATTTGGAAAACGTAAAAAACCACTCAAAGCTGCAACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCGTAGATTTAAATAATTACAAATTGTTTAAATTATGAACTCCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATGTTTATGATATAATAAAAGTATATTATTTTTGCAGTGAGCGATATTTGTATTAAAATATGCTTTAACCGTTGAAATGTAAGGCATTGAGAATGTGTGATAAGTGTTATCAATTGCACTACTTGTGCTTCACTGCAAATTTAAGAGAGTTATGTAAGTGTAAGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : TAAGAAATTGTTATGATAATGACTCTATAGAAAATTTCTTTGGTTATCTTAAAAGTGAAGAGATCTACTTAAATTTGTATACTTCAAGAAATGATTTAGAAACTGCTGTTCATAGCTATATACGTTGGTATAACTATGATAGATTACAATCTAAATTAAATAGCAGCACACCTGTAGAATATAAGCGTGCTGCTTAAAAATGACTATCTTATTAAAAACTGTCTACTAATTAGGGTTCAGTTCACATATAAGTGCTACCTTTTATTTTGTAGATAAAGTGTTTTACTGACATAAGTATTAAATTTACATTTTAAAATTATTTAAATATCAATAAATAATTAAATAGAAATTATTATAATTAACAATAGATTCCTTTTTCAAAGAAGTCTTTAATTTCATCAAGGTTATCAGTTTTTCCAAGTGCTAAGATAAGTTTTATTCTAGCTTTTTGACCTGGCAAGTCTCCACCAAATATACAGCCAAGATTTTTTAAATCTCTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 44391-45537 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000027.1 Clostridioides difficile strain FD045 sequence27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 44391 29 100.0 36 ............................. TAAATCATAGTTATGCTCAAGATAATAATCAAGAGA 44456 29 100.0 37 ............................. AATTTTAATCTGCCTCTTGCTGGATTTGAATTTAATA 44522 29 100.0 37 ............................. CAGATTGGAGTTCTTTTGTTGATACTTTTAAAAGAGA 44588 29 100.0 37 ............................. GAGGAATTTAAAAAATGGTTAAATGATACTATAAATA 44654 29 100.0 36 ............................. AAAAGGCTGTGTAAACTGTTTCTCTTATTCCTCTAT 44719 29 100.0 36 ............................. AAAAGGCTGTGTAAACTGTTTCTCTTATTCCTCTAT 44784 29 100.0 38 ............................. TTTCATATTCAAAGCCATAACTATCCATTCGCTTTAAA 44851 29 100.0 36 ............................. AGAAGTTAAAAAATGGAGGGATAAAGATGAGTAGAA 44916 29 100.0 38 ............................. ATGGAGGGTGGTTATTATCAAGCTATGGATGGTAAAAG 44983 29 100.0 37 ............................. TATAAACAATTGAGTTATTTCGAAAACTAAATACAGA 45049 29 100.0 37 ............................. TTTCGTTTTCTGCAATCAATATTTGATTTTCTAACTC 45115 29 100.0 35 ............................. CTATTAACTTTAGGTATTTTGTAAGATTTTTCCTC 45179 29 100.0 37 ............................. GAAAAATTTATTTTAAATAAAAGAACTAGCGACTCAA 45245 29 100.0 38 ............................. AACGATTCAGTATCTTGTTGCAACCCTTGACCACTTTC 45312 29 100.0 37 ............................. CATGAACATTCTCTATAATATGTGTGTTCTTCAACTA 45378 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 45444 29 100.0 36 ............................. TTTATACCAACAATTTTCTTCTCCATACTTTTCCAT 45509 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30832-32303 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000005.1 Clostridioides difficile strain FD045 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 30832 29 100.0 37 ............................. GAACTTGTGCAAATGCCAAGGGGTTCTAAAGTTTTTA 30898 29 100.0 36 ............................. TCTTTTACGTTGGCTTAACTGATTATTTAAATTAGT 30963 29 100.0 36 ............................. ATGTCAGTCACTAAAGTAAAATATTGTTGTTCTGCC 31028 29 100.0 37 ............................. AATTCAAAAACTAAAATTAGAGGAGTTTATTATAATA 31094 29 100.0 38 ............................. AAATCTTCAAAGACATTGTCAAGTTCACTATCATCAAC 31161 29 100.0 37 ............................. TCATTGATGTCGTAAATGACCTTGCATAATTAGCCTT 31227 29 100.0 37 ............................. TTGTAACCTCAACAAAAGCCTCTTTTGCACTACTTCC 31293 29 100.0 37 ............................. TACATAATTCTATAAACATTAGCACTTCTTGGTCTGT 31359 29 100.0 37 ............................. AAAATATCTGCTGATACTTTATCATCTCCAGAATATA 31425 29 100.0 36 ............................. TATAGTTGAGTAAATTTTTCTCCTGTAGTCTTACTC 31490 29 100.0 37 ............................. CCTCTCAAAATTAAATAATGTGGTCAAAGTAAAATGT 31556 29 100.0 36 ............................. TTTATAGTAGTAATTAATTATGAATTAGCTTTTAGA 31621 29 100.0 36 ............................. TCATCATAACATTTCGTAGGAATATAAATAGTGTTT 31686 29 100.0 36 ............................. GCCTGTAACTACTTTTAAGGAAGGATATTTAGTACT 31751 29 100.0 37 ............................. ATTTTAACAGCAGAAGGATTATTTGCTTTTATCAATC 31817 29 100.0 36 ............................. TTTTTTATACTTTCAGATAATTTACCAGCTGAATCC 31882 29 100.0 36 ............................. TTTATTTCTCTAAGAATATTGTATAACACTAAGTCA 31947 29 100.0 37 ............................. TCTTGAAATAACAGAACTAGAGGTGATTAGATGAATA 32013 29 96.6 38 ...........G................. CTTGAAATGTGGTATCAAGAGGTGTATGGAAATTTGAA 32080 29 100.0 37 ............................. GAATTAAAGTGTATAGATATGTCTAAATCAACTTTAG 32146 29 86.2 36 ......................GA...GT AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 32211 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAATCAGCC 32275 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 97.2 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : TAAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5166-6055 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000054.1 Clostridioides difficile strain FD045 sequence54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5166 29 100.0 36 ............................. AGAAATATCATTTTTATATGTGTATGAATGATAAAA 5231 29 100.0 38 ............................. ATTTGAACTTTTTCTTGATTAAATTCATAAACAATAAC 5298 29 100.0 38 ............................. AGATTTAATTTGGCTACTAAAAGGACCTATACACCTAA 5365 29 100.0 37 ............................. CCTTTTGCACACTGTACAAAATCATAATAATTACCAC 5431 29 100.0 38 ............................. TGAATAATGTAATCACCTACATTAGCCTCGTGTATACC 5498 29 100.0 37 ............................. TATACATTAAGAAGTTTACCAAATGGAGTAAAAGATG 5564 29 100.0 38 ............................. TATCTTAGTGAAATAGATTTAATTGAGTTAGCTCTTAA 5631 29 100.0 37 ............................. AAAGTACTTTTTGCTGATTCGGTAGCGTCTTCTGACA 5697 29 100.0 37 ............................. CCAACTAACTCTTCATAATCCATACTCGTTAACTTTG 5763 29 100.0 38 ............................. ATTGTAAAAGAATTAAAAATAGAATTAACAGAAGAACA 5830 29 100.0 36 ............................. ATCTATATGCATGGGCAACAGAAACATTGCCAGGGA 5895 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 5961 29 82.8 37 ......T........AG...T.......G ATAGATGCTCACCAACATAAAATACCTTCAAAGACAG 6027 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 97.8 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATACTAGGATAAAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTATATTAGCTAGCTTGATAGCTAGTTTAATTGGATATATCGTTTGTAGATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAACTTGATTTTAAAATAAAGTTCCGCAAATTTAAATAATTTATATTTTTTAAAATTATGAACTTCACTCTACCGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTAAGGGTGTATGATAAGTGTTATCATTTGCATTACTCATGGTTCACTGCAAATTTGAGATAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTCAAAACTAAATAGAAAAAAGGAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGTAAAAACCTATTGCTTTATTGTACGTACTATATTATAATTTAAGTACGGACGATAAAAAGAGAGGTGATAAGATGTCCAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTAGTAATTAGAGGGATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 5091-6639 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000055.1 Clostridioides difficile strain FD045 sequence55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5091 29 100.0 37 ............................. GCAGGAAGTTGAGGCATAGAGTTTATATTAACAGTTC 5157 29 100.0 39 ............................. ATGGGATTTTTGCAAATAGTTTTTTTCTAAATTGCGTCC 5225 29 100.0 36 ............................. ATCGACCCGACGAGTGTTATTTTTTTGCAAGATAAT 5290 29 100.0 36 ............................. GAAAGTATGCGCGCAGTAAATATGCTAATGAATCAA 5355 29 100.0 37 ............................. GGAAAATTGTGGGAAAAGTTTACGGAAGTTATTGGGA 5421 29 100.0 38 ............................. TTTAAATATTATGAACTAGAAGAAAATGAAAAGAATAA 5488 29 100.0 37 ............................. GTCAATTACGACGGACAAACGGATATAGTAGCAACTA 5554 29 100.0 39 ............................. TATGATGCGCTATATGAACTAGCAATGAACTTTGAAAGA 5622 29 100.0 37 ............................. TCATAAATATCACCCATAACTTTATATTTTGAAAACG 5688 29 100.0 38 ............................. TAATAATTGATTTTTTTTAAGGAATGACGTATACTATA 5755 29 100.0 37 ............................. AGAAAGATACTGCAAATATTTATATACACCAAACATT 5821 29 100.0 37 ............................. CAATTATTTTTTAAATGTATTAGAAGAAAATATCAAA 5887 29 100.0 37 ............................. AATCAAAATAACACTTTGGAAGTTAAATATAGAATAT 5953 29 100.0 35 ............................. GACTACGAGAGGGCATTTGTTGCTGCTTCTATAGA 6017 29 100.0 37 ............................. AACAAATACTTTTTGCTTTAATCTCATTTATAGGCTT 6083 29 100.0 38 ............................. TATTTTATGTTTCTGATGTTTTATTTAAAAAATTTCAA 6150 29 100.0 39 ............................. TAAAATGTTGTTTCTCTCTCATAGTAATTGTATTTACCA 6218 29 100.0 37 ............................. AATGAAATCACACTGTCTGAATTTTTATTGGATTTTC 6284 29 100.0 36 ............................. CCAACTTGAAAAGCTCGTAGTTCAGATGATTAAATC 6349 29 100.0 37 ............................. GTAGCCTATTGTTTGGTTTCCTGACATTTCGTAAGAC 6415 29 100.0 37 ............................. TAGTTTCTTCTATGCTAGAATGTCCAAGCATTTCTTT 6481 29 100.0 36 ............................. TACTTCCAAACTAGAAAAACTCCCATGATTGAAAGA 6546 29 86.2 36 A.....T........T....T........ TACACATTTTCTCAAATTTGGACTTCAATTAAAAAT 6611 29 82.8 0 ......T........T.....C.TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 24 29 98.7 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : AGTTCATATATCGAAAAATTATCCTCCCAACGTATAGAAGGGAGGTGTGATATATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTAGTATAATAGTTTACTTAATTAGTAAATTAATTAAAGCCAAAAAAGCAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGTTCGATTTCTTGAACAAAATAGGGCTTAAGCATTGAAATGTAAGGTATTGAGAGTATATGATAAGCATTATCATTTGCACTACTGGTCGCTCACTGCAAATTTAAGAGAGCTGTATATGTGTAGGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : TTAAAAACGCTAAAAACACTTACTTAAAAAGTAGGTGTTTTTTTATTGAAAGTAGGTGATTATAATGTAAAAATTTTACTAATATAGTATAATATTGTTAAAGAATATAATTTAGGGGGATATTATATTATGAAGAAAAAAGTATGTTTTTTATTTTCTATTCTTATAGTTATCTGTTTAGCTATTGTAGGATGTTCTAATTCAGAAAGTCCAGAGGAGAGTAGTAAAAATAATGAACCAAAAAAAGAAGAAAAAAAGGATAAAGAAGTAGTCATAGGAGAGAAAATTATTTCAGATAAAATGGAAATCGCTATTAATAATATTGAATTCTCTTATGATGTTTTACCAAAGGTTAAGGAAAGTTTATATACACATTATCCTGCTGAGTCAGGCAAAGTATATATTGATATTGCTGCTGATATAAAAAATACTCAAAAACAAGAGTTAAATTGTTCAGATTTACTAACTATTGAAGCAAATTATAATGATGGGTATAAATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6363-6589 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000065.1 Clostridioides difficile strain FD045 sequence65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6363 29 100.0 38 ............................. TCTTAACAAGTTTTTTAGTTTTTGAAACAGGGTTAATA 6430 29 100.0 37 ............................. TATCGTACTTTCCAAGAAGTAGAGCAACCAGAAAGTG 6496 29 100.0 36 ............................. CTTTCATGAGCAACCTCCTAATTTATTTAACATTTA 6561 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGATTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9661-9146 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIOK01000059.1 Clostridioides difficile strain FD045 sequence59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9660 29 100.0 38 ............................. CTAGCAAAATTTGATAAAAGGTACTATTATTGTAGTAT 9593 29 100.0 37 ............................. TTCATATTCCAAACATTTTGCTTACACTTAATCGAAA 9527 29 100.0 37 ............................. AGGAAACGTTGAAACGGCAGTTGTTTCACCTTTTACT 9461 29 100.0 0 ............................. - Deletion [9433] 9432 23 69.0 38 ------..........G...T.......G ATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 9371 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 9304 29 82.8 36 A..............AG...T.......G AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 9239 29 82.8 36 A..............AGA..T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 9174 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 88.9 33 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TCTCAA # Right flank : TAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACAAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGAA # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.19%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //