Array 1 2130760-2128521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023410.1 Clostridium perfringens strain LLY_N11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2130759 29 100.0 36 ............................. TTTCAATTGTATCTTTGTCAATCTCTAACTCTTTTT 2130694 29 100.0 37 ............................. AAGGAAAATAATGCAGCTAGAACGCTTTCTGAATCTC 2130628 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 2130563 29 100.0 36 ............................. ATTATTGTAAAGTAATACTAAGAAATACTAAGTATA 2130498 29 100.0 37 ............................. TTATTTATAATCTTAAAAATAAAGAGGGAAGCTATGG 2130432 29 100.0 36 ............................. AGTTGATATTTGGAGTAAAGATGGAATTGAAGCTAG 2130367 29 100.0 36 ............................. AAGAAGAACTTTACAATGCATTAAGAGAAGAATGTA 2130302 29 100.0 36 ............................. ATGTTAGCTTTGAAAATGCTATAATTGGTACAAGTA 2130237 29 100.0 36 ............................. TAAATATTTAATAATTGTTTAAATATACTTTCAAAA 2130172 29 100.0 36 ............................. TATAAATTTGTTAAATATAATCCTTATACGATAGAA 2130107 29 100.0 36 ............................. TCCCTTCTTCTTTCCACATTTTATATCCTGTAATGG 2130042 29 100.0 36 ............................. TGTACTAAAACTGGATAATCTCCAATATCTAAATTA 2129977 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 2129912 29 100.0 32 ............................. CTCCTAAATCACAATCTTTAAAAGACAATTCC 2129851 29 100.0 36 ............................. CTTATAGCTGCATTGATAGGTGCTTTAATAACTCCT 2129786 29 100.0 36 ............................. TGTTAAAGTAGGATATTTTAGAGAGTTTGGAACTAT 2129721 29 100.0 36 ............................. AGTAATGATAATAGATTAGATGATAACTTAAACTGT 2129656 29 100.0 36 ............................. AAAGAGTAAAGGCAGATACTTTTGTTTCTCCTTTGC 2129591 29 100.0 37 ............................. ATTACCATATTTTTCTCTTAATCTTAAAAGTTCTTCG 2129525 29 100.0 36 ............................. CTTATAGGTGATGAACCTGATGAACTTGTAGCATTA 2129460 29 100.0 36 ............................. TTTTAATAGTATAGGAGATGAATTAGAATGAGAAAG 2129395 29 100.0 36 ............................. TTGTCTGAACGAATATCTATGTTATAAACTTTATTA 2129330 29 100.0 35 ............................. ACGAAACCAAAAGAACAATAATACTTTTCCATTTT 2129266 29 100.0 36 ............................. TGTTAAAATCATCTTCATTCATGATTTGGAAAGCCT 2129201 29 100.0 36 ............................. AACATTGGTGTACATTTAACACTTAAAGATTTTAAC 2129136 29 100.0 36 ............................. AATGTTTGTGTCCAATCTCTACTAAATGCTCCTTTG 2129071 29 100.0 36 ............................. ACTAATTTCATTGAAATACCTCCTAATAACTAACGT 2129006 29 100.0 36 ............................. TGTAATCTCTACATGTACTATGACACCCAACAATTC 2128941 29 100.0 37 ............................. GGAGTTTTACTTTTCTTTATATCTTTTCTTTTCCATG 2128875 29 100.0 36 ............................. TTGGTATTACTAGCTTTGAAGCACTTACAAGTAAAA 2128810 29 100.0 36 ............................. AAAAGTTATCAACAAGAATTAAGGGATATATCTCAA 2128745 29 100.0 36 ............................. TAGTTTTGGTAAAGTTAATAAGATATTAAAGAAACA 2128680 29 100.0 36 ............................. ATTTTTTGCTCTAACCCTTGCCTTCCCATTTAAGCG 2128615 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 2128549 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 35 29 99.2 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAAATCTATTTTCTTATAATACTAGCTATAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTAGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATGAGTAATTTAAGTTTTATAATAAGAATTTAAAAGTAAAAATGGACATGCTATCTGTCCATTTTTACTTAACTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //