Array 1 3034709-3033167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012930.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3034708 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3034647 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3034586 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3034525 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3034458 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3034397 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3034336 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3034275 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3034214 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3034153 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3034092 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3034031 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3033970 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3033909 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3033848 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3033787 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3033726 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3033623 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3033562 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3033501 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3033440 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3033379 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3033318 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3033257 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3033196 29 96.6 0 A............................ | A [3033169] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3052093-3050967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012930.1 Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3052092 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3052031 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3051970 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3051909 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3051848 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3051787 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3051726 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3051665 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3051604 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3051543 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3051482 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3051421 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3051360 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3051299 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3051238 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3051177 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3051116 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3051055 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3050994 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //