Array 1 9876-9368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKAEK010000021.1 Escherichia marmotae isolate HUSEmarmC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9875 28 100.0 32 ............................ GTTCGCCGCGTTAATGCGGTCCAAAATAAAAT 9815 28 100.0 32 ............................ GCGCACGGCATCACAGAACTGCATTTTCTGGC 9755 28 100.0 32 ............................ AGATCGACACCAAAACGCCCGTCTTTTTTACG 9695 28 100.0 32 ............................ GCCGTCAGATGAGCAGTCAATAGCCTGGTGAG 9635 28 100.0 32 ............................ ACACGGAGAGCCAGTGGATTGAAACCACGTAT 9575 28 100.0 32 ............................ TCCAGCGCCAACGTGATCGCCTGTTTGCGAAA 9515 28 100.0 32 ............................ ATTTCAGGCCAGTACGACCAGTACCGCACACC 9455 28 100.0 32 ............................ TGTTTGAGAACCTTCGCCGCATGGGGCATCAG 9395 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACATCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25540-24129 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKAEK010000021.1 Escherichia marmotae isolate HUSEmarmC1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25539 28 100.0 32 ............................ AACCGAAACGGCAGTAGTTAAAACGTGCGAAC 25479 28 100.0 32 ............................ TTATGGAATACCGATTCATAACGGCGGAAATG 25419 28 100.0 33 ............................ GGTAAGCGCCTGGCCGTGACTATCCCGAAAAAT 25358 28 100.0 33 ............................ AATGAAAGGCGGGCCATAAGTGCCGCTCATCAG 25297 28 100.0 32 ............................ AGTTTGATTCGAAACTGGCGCAGATAGTTCAG 25237 28 100.0 32 ............................ TTTATGCGCCCGATTTTCCCGGCGTCACTGCC 25177 28 100.0 32 ............................ AGTGACGGACAGAACGGTCAGGACCTGGATTG 25117 28 100.0 32 ............................ TGACAAAAATCCGTTAGGCGCGGAAATGATGA 25057 28 100.0 32 ............................ TGTTCGCGCGACAATTTGGATACTGAATCAGC 24997 28 100.0 32 ............................ ACTAAATAAGTGGTGTCGTCGCTGCCGCCATA 24937 28 100.0 32 ............................ CGGGGCTTTTTATTCAATATGCCACCGCCGGT 24877 28 100.0 32 ............................ TCAATCCTCCCCGCCTGCGCCGCGTTGTAGTT 24817 28 100.0 32 ............................ AACCCCAATAAGCCGACGTGGGGATTTACCGC 24757 28 100.0 32 ............................ GTCTGCCGCCGGGTTCATCTCGCTTGTGATGC 24697 28 100.0 32 ............................ GCGCAGTCATGCACAGCGCGCAGCAGGCTGCG 24637 28 100.0 32 ............................ AATAAGAACGGTCCCTGATGTGCGGAGCACCG 24577 28 100.0 32 ............................ GTCGGATATGCTGATTATTCAGATGACCGAAG 24517 28 100.0 32 ............................ GCCTGCGCGCGCACATCGGCGAGCCTGACACC 24457 28 100.0 32 ............................ ACGCCGGATAAGTCAGCGCGCCAGGGCGCTGC 24397 28 100.0 32 ............................ GTTTATCGGTATTGAACGGGAGCCGCGATATT 24337 28 100.0 32 ............................ AATGATTTTCTTATGAAGAATCTGGACAAAGT 24277 28 100.0 32 ............................ TCTAATCGCCTCGTATCGCCTGGACTGGTTCC 24217 28 100.0 32 ............................ GCACTTATGGCGAGTAACAAAGGTTGAAATGT 24157 28 92.9 0 ....................T...C... | C [24134] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATTCATTGTCGAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCAGATTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGGGGAGGTTCAGCCCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGACGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //