Array 1 152794-154408 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMHA01000001.1 Aerococcus urinae strain UMB0621 NODE_1_length_436588_cov_111.027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152794 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 152855 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 152917 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 152978 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 153039 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 153100 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 153161 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 153222 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 153283 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 153344 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 153405 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 153466 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 153527 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 153588 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 153649 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 153710 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 153771 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 153832 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 153893 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 153954 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 154015 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 154076 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 154137 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 154198 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 154259 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 154319 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 154380 28 75.9 0 ......-....C.......T.T.A...TG | A [154398] ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGCAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173359-173872 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMHA01000001.1 Aerococcus urinae strain UMB0621 NODE_1_length_436588_cov_111.027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173359 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 173420 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 173481 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 173542 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 173603 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 173664 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 173725 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 173786 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 173846 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //