Array 1 113668-114915 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTO02000005.1 Salmonella enterica subsp. enterica serovar Montevideo strain HIY0283 NODE_5_length_329372_cov_39.711589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113668 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 113729 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 113790 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 113851 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 113912 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 113973 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 114034 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 114095 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 114156 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 114217 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 114278 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 114339 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 114400 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 114461 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 114522 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 114583 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 114644 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 114705 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 114766 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 114827 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 114888 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131678-133781 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTO02000005.1 Salmonella enterica subsp. enterica serovar Montevideo strain HIY0283 NODE_5_length_329372_cov_39.711589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131678 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 131739 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 131800 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 131861 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 131922 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 131983 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 132044 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 132105 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 132166 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 132227 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 132288 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 132349 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 132410 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 132471 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 132532 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 132593 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 132654 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 132715 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 132776 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 132837 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 132898 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 132959 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 133020 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 133081 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 133142 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 133203 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 133264 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 133325 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 133386 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 133447 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 133508 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 133569 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 133630 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 133691 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 133752 29 96.6 0 ............T................ | A [133779] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //