Array 1 672-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAO01000016.1 Bifidobacterium sp. UTBIF-78 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 671 29 100.0 32 ............................. TGGCCGACGGCGGCGCCGAACTTGGGGCCCTC 610 29 100.0 32 ............................. TGGTTGAGCCGGTCCTCGATCATGTGGAGGGT 549 29 100.0 32 ............................. TGGTGGCCAGGGCGAAGAAGACCCGGCTCAAG 488 29 100.0 32 ............................. GCCAACAAGATGGGCACCGACCTAGAGACGAT 427 29 100.0 32 ............................. GCCTTCGCCACCACCGACGACTTCGTGGAGGG 366 29 100.0 32 ............................. AGGCTGTTGATGTCCGCGTCGGTGGCGGATTC 305 29 100.0 32 ............................. CGCGCAAGGCGGAACCGGGGCGAACGGAACGG 244 29 100.0 32 ............................. CGCTCGCCGAGGTCGCGGCCCTTCGGCTCGTC 183 29 100.0 32 ............................. GTGGACAAGAAGGTCGCCGACCTGAAGACCGA 122 29 100.0 32 ............................. TACATCGAAAGGAACATGAAATGAGCGAAACC 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : CTTGGTTTCCGGGTGCATCATGCTGATTGGACGCCGGTGGATTGTGACGGGTTGGAACTTGTGCAACGTCCCAACAGCATGTCCAAGGGTAGAAATCAAACTGAATCGCACTCTCGACGTCCCGGCTGGAGCAATGCCAGCAAATGGCGGGCTGCACGTAGATATCAATAACAACTTCCATGCTGGTGCCGAAGTTGATAGTAAAGATGTTATTTCCGCCGTACCCTGTTGGGGCTGATGACGAAGTCTGTTGGAGAGGACTGCCGTAGGCGACTGTCGTAGAGGACCTGCGATGTGTTGTAGCGCAGCAGTGGCTTGCGCATTGTCCGGCATTTTGCTTAGTCCGGAATCTTTGCACTTTGTGATGGAAATCCGCTGGTGAATTCGCTATAGGGGAGTGGCTGATGTAGGCGACTCCGCAAATAGTGCGGAGAACGAAAGTGAAGGAAACAGATGACGACGCATCCATATATCCCTTGAAATTGCTACACTTTGCAAGT # Right flank : CTCGGATGGCACCGCGAACAACAACAACGCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23-417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAO01000077.1 Bifidobacterium sp. UTBIF-78 contig00078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 ............................. AGGAGCGCCTTCATGCCGGCTTCCATGATCTG 84 29 96.6 32 ..............C.............. GAGCGGCTCGTGGGCGCCCTCGTGGCGATCAC 145 29 100.0 32 ............................. CGTTTCGCCTCAAGCTGCTTCTCCCGGTCCGT 206 29 96.6 32 ........T.................... GCCTGACAGCGCGGCCATAGCGGCCCGAGTGG 267 29 100.0 32 ............................. GAGCTTGTGCCTGCCCCGATGGCGGTGCGGGC 328 29 96.6 32 ..........................T.. CAGGTCACTAGCACCGTCAGCAACGGCGTCAC 389 29 93.1 0 .......T....................T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.6 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : ATTGAATATGCAGGGCGCGGGCG # Right flank : TGATTTGCCCCATACCGTCCCGTCCAGTCATGGAGTGTTCTCCTACAGCGCCGAGGAACGCAACATCGAACTCGGACTACGGCTAGAGGGCCGGAACCTGACTGAGCAGGCGAAGGCCTGGTGATGACGGATGGATGCAGTTAGCGCAGTTTTCAAGTCACGAAAAGGAAGCTCATGCATGGACCAAATATAGTCATTAATACTGGTCCTCGAATACCCAACCGAAGATTTCCGAAGAATGAGCTATCCAAGCCCGCATGATGTGGCGTAATGCAGAACTTGACGTTCCGCATTACGGAGAAGCGGGACGATTATATGGTGGGAATAGGCAGAAACTGTGGCTGACCGAGCTCACCATCCGGGATGCAGACTGGACCGACGCTTCCCGTCTGTTTCCTATCGTCGTAATACCGTAATTCGTCGCCACCATGCCAGAGCTGCTCCGACAGAGCTTCGACATCCTGTCTATATCTTGTCGTGGCAGACTCAGTCCTCCGAGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 719-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFAO01000087.1 Bifidobacterium sp. UTBIF-78 contig00094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 718 29 100.0 32 ............................. ATGTCATCAAAAACAACCAATACTGGGCACTC 657 29 100.0 32 ............................. ACGACCATCAACGACATGGGCGGCACCGCCGT 596 29 100.0 32 ............................. GCTTCCGGCACAGTGCAGAAATACGCAGCTGA 535 29 100.0 32 ............................. GTCACCAGCATCCAGACCGGCCCCACCGACGA 474 29 100.0 32 ............................. GTCACCAGCATCCAGACCGGCCCCACCGACGA 413 29 100.0 32 ............................. TGCAGCTCGGGGTATTCGCTTACCGGGTAGTA 352 29 100.0 32 ............................. GAGATCGACGAGCCCGACGCCCACCTGACAGC 291 29 96.6 32 ............................T AGAAGCGTCCATTACAGTGCGACGCTAGCACC 230 29 100.0 32 ............................. CCGTCGCCGTGGACAGCATCACCCTGTCCAAG 169 29 96.6 32 ............................G GCCTGTTGGTTTTCTCGAACATGGTGGAAAGC 108 29 100.0 32 ............................. ACCGTGCAATCCATCTGGGACGGCATGGTGAA 47 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCATGCGGGGATGATCCC # Left flank : TCGAGGAAGCCCGGAAGTGCCTGCGCGATCG # Right flank : CGAGTCCGCGAATTGAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [16.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //