Array 1 2120454-2122271 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041944.1 Lacticaseibacillus paracasei strain NJ chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2120454 36 100.0 30 .................................... CAACAGCTTTCCCGCAGATTCAGCATCGCT 2120520 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 2120586 36 100.0 30 .................................... GCAATTTAATTTATAACCCAAGTTTATCAC 2120652 36 100.0 30 .................................... GAGTTTTAAGGTGATCAGAATGTATCGAGA 2120718 36 100.0 30 .................................... AATTCTTGACCCCATGATTGAGACGTATCT 2120784 36 100.0 30 .................................... TTCGTTGATGAGATGATCGAGCATAAACAA 2120850 36 100.0 30 .................................... CAATGCCGGGGGTCCAACCATAGCCTGTGT 2120916 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 2120982 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 2121048 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 2121114 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 2121180 36 100.0 30 .................................... GGGATTGTGGGCTGACGATAGATATACGCT 2121246 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 2121312 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 2121378 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 2121444 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 2121510 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 2121576 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 2121642 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 2121708 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 2121774 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 2121840 36 100.0 30 .................................... AAAGCGTTCGCTTTGATATATCAAAATTAG 2121906 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 2121972 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 2122038 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 2122104 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 2122170 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 2122236 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.2 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : CAAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //