Array 1 579793-580918 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPK01000058.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SALB-47-2 NODE_181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 579793 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 579854 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 579915 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 579976 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 580037 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 580098 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 580159 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 580220 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 580281 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 580342 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 580403 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 580464 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 580525 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 580586 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 580647 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 580708 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 580769 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 580830 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 580891 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 597177-598785 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPK01000058.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SALB-47-2 NODE_181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 597177 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 597238 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 597299 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 597360 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 597433 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 597494 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 597555 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 597616 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 597677 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 597738 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 597799 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 597860 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 597921 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 597982 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 598043 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 598104 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 598165 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 598226 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 598287 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [598329] 598329 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 598390 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 598451 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 598512 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 598573 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 598634 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 598695 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 598756 29 96.6 0 A............................ | A [598782] ========== ====== ====== ====== ============================= ============================================ ================== 27 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //