Array 1 18964-19169 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYZ01000087.1 Acinetobacter junii CIP 107470 = MTCC 11364 contig87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 18964 26 100.0 34 .......................... TAACAGAAAATAGAGATCGGCAGTTATTTGATGT 19024 26 100.0 34 .......................... TTGTCTGCGTAACTCCGTAACCTTTGCGCCCTGT 19084 26 100.0 34 .......................... TTAACCGTTTCTTGTGTCTGTTCTTTGTTAAAGT 19144 26 88.5 0 ...................G..T..T | ========== ====== ====== ====== ========================== ================================== ================== 4 26 97.1 34 GTCCTATCGCATAGATAGCTTAGAAA # Left flank : GGGCCAGTATTCAAACAATGGCCAAAATTCAAGGCAACACATTTGAGGGTTTAAAACATATTTATGACAATTTTGGTGATGACGTTAACCTTTATATCATTGACTTTACAAGGGGTAGAGATCAAAATAACAGCAACTCCTACGGAGGTTGGGAATATTTAGATGTTCTAAAGTCACAAGGGAATGAACAACAAATTTTAGAACGATTGGAACAGCATTTAATATTAGGTTATCAGAGAGGTGTAATTAGTCATGAATGTTTTGAACAAGCAGCAGGTGGTAGGATCAAAGCCAATGAACTACAAGTCAAATACAATGATGCAAACGTTCATCAACAACGCTCTAATGACACACGATCAGATGAGCAAGGACGAAACTTATCGCCAGCAAGTAGCAACACGAGCGACAACATCACGTCCAAAGTAACTTCCAAATTTAAGCCCTGATTTTTTTAAGAATGAACGAATAAACGTTCATTTTTTTTTGGCGTTTTATATAGT # Right flank : TCATTTAGTAAATTTTTGAGTTGTAACAATGGCAAACTTATCAACAGAATATTCCTTACCTTTAAAAATAGTTGCTGTCCGCTTAAATCACATGAAATCCCACTTGCCAGGATTACTGAAAAAGATCGAGAAACGAGCCATTGATAATTTAAAGCAACGTAAAACTCAAAATGATAAAGATGATACACAGGTATTATTAACATGGGACGATTGGATCTATGCAGCTCTTGATGCCGACCATGAACGAGAAAACGCCAAAAAAGAAAATTCTTTAATGGAGACTCCAAATAAAGAATCCGTGTATGAAAAGGCTTTAAACAATATAATGGGGCGTACTTCTGCACGGAAACCAGGTTGGGCAAGTAATTTGAGGGTAGGGGAGCACATACCTAAAGAACTCCTAGATCGGCTTCCAGTGACAACTGGAGAGCTTGTGACACTCGGTAATTGGATGCTGACAAAAAATATTTATAGATTTGAAGATATTGTCATTACTGAGA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTATCGCATAGATAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: F [matched TTCCTATCGCATAGATAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15121-9082 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASYZ01000178.1 Acinetobacter junii CIP 107470 = MTCC 11364 contig178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15120 28 100.0 32 ............................ TTGTAATCAAAGGGATTACGATAGGAGCGAAA 15060 28 100.0 32 ............................ AACTTGAGCGGACATGACCTTCCTCAAACTTA 15000 28 100.0 32 ............................ AACGGAATTGGGGATCGATTCCATCAGGATCG 14940 28 100.0 32 ............................ TCTTTGAATGTGGTCATTGAACCCCTCCAATT 14880 28 100.0 32 ............................ CCTAAGCACAGTGGGTATTAGCGCATAAGACA 14820 28 100.0 32 ............................ TTTGGGTGCAGCTGACACTGGTGCCTATGGTT 14760 28 100.0 32 ............................ TCTTGTGTGACGACCATTACTGAATACACCAC 14700 28 100.0 32 ............................ AAATTGATTGATATAACTCTCTGCATGGACGG 14640 28 100.0 32 ............................ TCTGAAAAACCGCTTTTAAAAATATTGGCTGC 14580 28 100.0 32 ............................ GACATCACTGCAAGCTACGAACAGCACAAAAA 14520 28 100.0 32 ............................ AATGGATAAAAATGCGCATGTTGAGTCTAAAA 14460 28 100.0 32 ............................ AGTCATAGAATTGGATGACTTTCGGAAAAGAA 14400 28 100.0 32 ............................ TTGATCTTTTTAAATCCGTATTGTGTGGCGAT 14340 28 100.0 32 ............................ TACCGAAGCAAACCATGAGCTTGATACTGATT 14280 28 100.0 32 ............................ TGATAAAAGCACAGGACATGATCACGTTGTTG 14220 28 100.0 32 ............................ GTGGAGAGCTTACACGTTGGCGATATGGTAAA 14160 28 100.0 32 ............................ AACGGTTAGCTCATAAATCTTTTGTTGCGCTG 14100 28 100.0 32 ............................ TTCCGCATATTTCTTTGTGACTTGCACGGTAT 14040 28 100.0 32 ............................ AAACGGTGAATATCGGGTTATGTTGACGGGGT 13980 28 100.0 32 ............................ TTTAAGTCATACTTCTGAACGCAAAAATAAAC 13920 28 100.0 32 ............................ TGTTAGAGCAAGCTCAAATTGATTATTCAGAT 13860 28 100.0 32 ............................ TTTGTAACCTCATAGAATACAGCACGTTTCGC 13800 28 100.0 32 ............................ TTACAGACATCATTCATCGTCTGCCATCTATC 13740 28 100.0 32 ............................ TGACTTAATGCAGTGTTGATCTGCGTTGTTAG 13680 28 100.0 32 ............................ GATGCAAACTAATTTTTCATTTTCAGCAACAA 13620 28 100.0 32 ............................ ATGAGCTTGATACTGATTTTATTGCTAGTTTG 13560 28 100.0 32 ............................ TAGTCTTAATTACATATTCTTCAAAGCATAAT 13500 28 100.0 32 ............................ TTATCCTGAATGTGAAGATGATGACAAGAGAT 13440 28 100.0 32 ............................ AGTTGAGAAGAAGTCATGTCAGTTGAATACAT 13380 28 100.0 32 ............................ GTCAGAGTTAGGCAACGTAACAACTTATCGCG 13320 28 100.0 32 ............................ TTTCGTTGCTGCTGATAAACCAGTTTCTAAAA 13260 28 100.0 32 ............................ CATTCGCCACATGTAAAGAGTTGAACGTTCAA 13200 28 100.0 32 ............................ ATTCATATGCTCGGTATGTTAACTGATGCATT 13140 28 100.0 32 ............................ TTAAGAAAGACAAAGACCTTGAAGTCGCTTTA 13080 28 100.0 32 ............................ TGAGATTAACTTGTTTTGCTTGGTACTTTAAT 13020 28 100.0 32 ............................ TTCAGAGTTAGGAAATGTAACGACTTATCGCG 12960 28 100.0 32 ............................ AGGCAAACGCATTAGCTTCGGCACTTGCAGTT 12900 28 100.0 32 ............................ AACAAAACAGCTACACAGGTGGACGAGGAGAA 12840 28 100.0 32 ............................ ACATGACATAATGAATAAGGAGTTCGGTTCTG 12780 28 100.0 32 ............................ ACTGAATAGCATCAATCACTACAGGTTTTTTA 12720 28 100.0 32 ............................ ATGCAAGCATGATATTTTTCATCTTACTTATG 12660 28 100.0 32 ............................ TTGATGGGAATGCTTATGTCATGCAAAATGGT 12600 28 100.0 32 ............................ TTGGTAGTGTCAATCGTTCCTGTGAGATGTGT 12540 28 100.0 32 ............................ AGTTACTCTATATTTTTTGAATGTAGCTTCAT GGATATGC [12524] 12472 28 100.0 32 ............................ AGTACATGGCTTCGTTAAACCAAGATTCTGTA 12412 28 100.0 32 ............................ GAGAAAACTTGTGAATCTCGCATTAAAGCCAG 12352 28 100.0 32 ............................ TTGCGCTTTTAGTTTTGAAGTAGCCTCAAATA 12292 28 100.0 32 ............................ AACGTGTTTGAGTTTTTACCAGCGTTAAGTTT 12232 28 100.0 32 ............................ ACAGCCCCTTATCGGTTTTGCTGATGACGAAA 12172 28 100.0 32 ............................ GAAATCAACGAACGGTGACTAAACGATTATTT 12112 28 100.0 32 ............................ GTTTCTATTATTGAACCATAATGATTGATTAC 12052 28 100.0 32 ............................ TCAAATTTTGAAAGGACATACTGATGCAGATG 11992 28 100.0 32 ............................ TAAAGTATGAAACAATTGATAATGTATTAATC 11932 28 100.0 32 ............................ TTTGACTGTTTTTGTTTTTGGTTTACATAAAA 11872 28 100.0 33 ............................ ATCATAAGCGTTAACATACGAAATAGGATGCTT 11811 28 100.0 32 ............................ TGAAGTAAAGTATTAAATAAAGCCCAGCATTG 11751 28 100.0 32 ............................ AACAAACATGGGCAGTTGTCATTCAATAGAAT 11691 28 100.0 32 ............................ ATCATTATTGCAGCAAATTATAGGACGTGTGC 11631 28 100.0 32 ............................ ATTCAAACCTGCAAACGAGTTAATGACTGCAT 11571 28 100.0 33 ............................ TAAAGATGGCATGGGTCGTTTGCAATGTTTTAT 11510 28 100.0 32 ............................ GTGTGACGCATAACGAGAATAGATTCATGCTT 11450 28 100.0 32 ............................ AGTCTTTCGACATTTAGCATATGCAATATTGC 11390 28 100.0 32 ............................ ATCAATGTCCATGATGTATGGAACGGTAAACT 11330 28 100.0 32 ............................ TTTGAAGTGTCTAGCGTTTATGAGTTGCAAAG 11270 28 100.0 32 ............................ ACAAGTGACAGAGCTTATTGCAGGCACTGAAT 11210 28 100.0 32 ............................ TCTCACAATTTTCGACAATTGAAATTCTTATC 11150 28 100.0 32 ............................ AACCTGTATGATCGGCACGATTATTCTCATCT 11090 28 100.0 32 ............................ TCACTATTCTTTGTTTCAACATCATTATTTTC 11030 28 100.0 32 ............................ ATAAGCATTTGACTTGTAAGACCTACCAATAC 10970 28 100.0 32 ............................ ATAAGCATTTGACTTGTAAGACCTACCAATAC 10910 28 100.0 32 ............................ TAAAACCCCGCACCATAACTTTAAATGGAATT 10850 28 100.0 32 ............................ TAAAGACACAGTTAAGCCTGAATACAATTTCA 10790 28 100.0 32 ............................ GCTTTCGTGCTTAACCCATTTTTGCGCTAAGT 10730 28 100.0 32 ............................ GAATGATTCTGTATAACATTTTATATCATGTA 10670 28 100.0 32 ............................ ATGCGAAAAATGCAGAAGAAAAACCGACCTGA 10610 28 100.0 32 ............................ GCCCAATCATCGAAAATCAAGCCACAAAAACG 10550 28 100.0 32 ............................ ATTATCGAATCCTGTAGCTTGAGCCAATAAAA 10490 28 100.0 32 ............................ AAGCAAACGGCAAGCTTTTGACTTTAGACATC 10430 28 100.0 32 ............................ TGTGAACCTAAGAACATAAACGGAATAATATC 10370 28 100.0 32 ............................ AACTAGCGGCACTACAGAGACATATAGCGGTA 10310 28 100.0 32 ............................ GTCTGAGCGTCAATATTATGACGAAACAACTA 10250 28 100.0 32 ............................ AAGTCAAGATGATGTTCTTGATATGCTTTCGG 10190 28 100.0 32 ............................ AAAACGTTCCAGTTGGGCAGTTTCCTAATCCT 10130 28 100.0 32 ............................ ACTTGATGATAACGATGCCAAATTAGCAGCAG 10070 28 100.0 32 ............................ TGACGCAACTGGAGTGGTTTTAAAGCGACTTA 10010 28 100.0 32 ............................ AATATCAGGGTTATTAGCTAATTCAGCATCAA 9950 28 100.0 32 ............................ TTTGCCTTCGCCATCAGTTCTGATATTGACTC 9890 28 100.0 32 ............................ ATACCGAACTGGAGAGGGCTGGATTGCTGAAA 9830 28 100.0 33 ............................ TGATAGTTTGATCACATCATAACGATTTAGCTT 9769 28 100.0 32 ............................ TATGGATCGTTCAATGACTGTTATTTCTGAAA 9709 28 100.0 32 ............................ ATGATATTTGTGAGCTTGATATTGATATGTTT 9649 28 100.0 32 ............................ ACAAAAGCACAGCAAGACTACATTAACACATT 9589 28 100.0 32 ............................ TGATCTTCATAGCTTGCAATATTCAAACGTTT 9529 28 100.0 32 ............................ TAATATTTGTGATGCTTGTAAACGATCAGAAT 9469 28 100.0 32 ............................ AAGAAGGGAAATATCACTTAACTAGGGTAGAT 9409 28 100.0 32 ............................ TAATAAAAAGATTGCAATTGGAATTGCAAAGA 9349 28 100.0 32 ............................ TCGTGGTGGTCGCCTGTTTGGGCATGGTGGCT 9289 28 100.0 32 ............................ TGTTGGTTATCTCTGCAAGTACACATCGAAAG 9229 28 100.0 32 ............................ TTTGCGAGTTGGTGTTGAAAGTTGTTTAAGCT 9169 28 100.0 32 ............................ AAGTTATTGCACTAGACATGATCTGCAACAAG 9109 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 101 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAGATATTCGAAAATGGCTGGAACGTTTAGAAGATTATGTGCATATCACTTCTATTCGTGAAGTACCTAGCGATATTAAAGGCTATGCCATTTACAAGCGTAAGCAAGTGAAAACCAATGCCCAGCGTTTGGCACGGCATCGTATTAAACGTGGCGATATTGGTTTTGATGAAGCATTAGCAAGATATAGCAATGTAGTTACCACAACGAACTTTCCATATATCGAAATGAAAAGTTTGAGCACTTCAGATCAGCAAAGTGAAAAACGTTTTAAATTGTTTATCGAAAAGCAACCTGCTGAAAAAACCGAAACTCAGGTTTTTAGTACTTATGGATTAAGTTCAGTATCATCCGTACCCGAATTTTAACCCAATATTTTTTCACTCTTTAACAGCTTAATAAAATCAATAAGTTATAATAGTAAGTTAATACTTGGGTCTTTTATAGGATTTTAAGCATAACTTGCTGTTATAGCTTTATTTTTGATGTTAAAATTATA # Right flank : TATTATTTTCAGTTATACTTATCCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTACGATTATCCGCTTATTCGTCGGTCATCCCAATAACACGGTACTACAATCAAGTGGTTCTCATGCAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAAGACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTTGTATAATAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATGATTGATGCACTCAGATGGGTTTTACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //