Array 1 447210-446086 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOL01000002.1 Micromonospora sp. NBRC 110038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 447209 28 100.0 33 ............................ CAAGGGCACCATCGCCGACGCCACCCCGTTCGT 447148 28 100.0 33 ............................ CGGGCAGCGCGGCACCGAACAAACCGTCATCGC 447087 28 100.0 33 ............................ CTGGTCGGCCGGTGCCTGCCACGGGCCGATGAT 447026 28 100.0 33 ............................ CTGGCCACCCGGCGCGCGGCACGCGGACGGCCC 446965 28 100.0 33 ............................ CACGGCGACGACCTCGACGACGACGCGGACCTC 446904 28 100.0 33 ............................ CATCGCCGAGCGGTTCGAGGCGTGGTCGACGGC 446843 28 100.0 33 ............................ CGTCAAATACGTGATCTGGTACCGGGAAATCTG 446782 28 100.0 33 ............................ CTTCGGGACGTAGACCGCGCCGACGTAGCCGGC 446721 28 100.0 33 ............................ CACCGACTACGAGGCACCCCGCAATCTGACCGA 446660 28 100.0 33 ............................ CGGTGGTCCTGCGCCATGACGCCTCGACCGTCA 446599 28 100.0 33 ............................ CCGAGAGGACGGGCCGACATGGCCAAGGAGAAG 446538 27 96.4 33 .................-.......... CTTAGTTGTCACGGGCGGCTGTGTCCAGTCCTA 446478 28 100.0 33 ............................ GCGGTCTAGCCACTCGGCCGGGATCTGGTCCGG 446417 28 100.0 33 ............................ CGGCTCCCGGCTCAGCAACCACCCAGTGTTCGA 446356 28 100.0 33 ............................ CGACGAGGACGGGTCGGGCGACCGCAAGTGCGA 446295 28 100.0 33 ............................ CGACACGGGTCGAGCCGGGCCACACGTCGTGAG 446234 28 96.4 34 ..............T............. CCGGCTCTCCGCCTGGTTGGCCGTTGAGCTGCAT 446172 27 96.4 33 .....................-...... GGGCTGCCCGTCCGAGATGCAGATGCGCCGCCA 446112 27 89.3 0 ........T.......T....-...... | ========== ====== ====== ====== ============================ ================================== ================== 19 28 98.9 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGGCGACCCCGACCAGGCAGATGGCCGCGCCGACGACGTCGTAGCGGTCGGGCCGGAACTTGTCGACGACCATGCCCCACGCGAGCGACCCGGCGACGAACACGCCGCCGTAGGCGGCGAGGATGCGGCCGAAGTTCGCGTCGGGCTGGAACGTGGCGACGAAGCCGTAGAGCCCGAGCGCGACCACGCCGCCCGCGATCCAGAGCAGCCCCCGGTGCTCCCGCCAGCCCTGCCATACCAGCCAGGTCCCGCCGATCTCGGCGAGGGCGGCGAGCAGGAACAGCAGGATCGAGCGGGCGACCGTCATGCGTCAGACCGTAGCCGTAGGGCCCCTCGTCAGCGGTGGACGGGATGGCAGGAGCGGAGGCGCGGTGCGCGCCAAGCGCGGCGAGTCAGCGGTACCTTGTCACCAGCAACCGGGCGGCACGGGCGGAGGGATCTTGGTCGGGCAAGTGAATGAAATCGGCGCTGTTGATCTTTAGCGGTCCAGGTCAAGAAGT # Right flank : CAGCCGGTAGCGGGAGCCAGGCCGTCCACAGGCCGTCAAAGGCCGGACGAGGGCGACCAACGACGACCAAAGTCGCCCAGGTTCGCCCAGCTCACACAGCGTGCCTCGCTGCCCACCCAGGGGCCCGACTGAGCCCTTAGCGGTAGTTGGTGAACTGAAGGGCGATGCCGAAGTCCTCGCCCTTGAGCAGGGCGATGACGGCCTGGAGTTCGTCCTTCTTCTTGCCGGTGACCCGGAGCTGGTCGCCCTGGATCTGCGCCTGGACGCCCTTCGGGCCCTCGTCGCGGATCTTCTTGCTGATCGCCTTGGCCTTGTCCGAGTCGATGCCCTGGACCACCTTGGCGTCGATCTTGAAGATCTTGCCCGAGGGCCGCGGCTCGCCCGCGTCCAGGGACTTCAGCGAGATGTTCCGCTTGACCAGCTTCTCCTTCAGGACGTCCAGGGCGGCCCGGACCCGCTCCTCGGTCTCCGCCTGGAGGCTGATCGCCTCCTCGCCCGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 674478-675542 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOL01000003.1 Micromonospora sp. NBRC 110038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 674478 28 100.0 33 ............................ GTCGCCCTCGCGCACGTCGCCGGCAGCGCCGCC 674539 28 100.0 33 ............................ CGACGGCCTCTTGACCATCTACGTAGGCGACGA 674600 28 100.0 33 ............................ CCGGAGCGTTGGGCAGGGATACGCGGCTGCCCT 674661 28 100.0 33 ............................ CGGCACGTCGGCGGCCCTGGCCAGCAAGACGGT 674722 28 100.0 33 ............................ CGTCCGCACCGTCGGCGTCTCGTCGGTGACCCC 674783 28 100.0 33 ............................ GTACCCGTACAAGACGGGATGCTGAATCGACAT 674844 28 100.0 33 ............................ CGATCCGGGGTCGACGTCGACCAGGACGACGAG 674905 28 100.0 33 ............................ CGCGACCAGCACCGGCAGCCCCACCCACAGGGT 674966 28 100.0 33 ............................ CTCGCCTGCGACGGCAGCTGCTCGTCGGTCTGC 675027 28 100.0 33 ............................ CTGGTCGACGTGGCCGAACATCCGGCACAGCCT 675088 28 100.0 33 ............................ CTGCGCGAGCAGCTCGACGCCGCTCGGGCCGTG 675149 28 100.0 33 ............................ CAGCCCGCCCCGGCGTGGCACTTGGTCAGCTGT 675210 28 100.0 33 ............................ CCAGCGCCCGACCGGCCAGGGTGGATGGTTCGC 675271 28 100.0 33 ............................ ATGTAGTAGACCACGACGAGATTGATCCGGCCC 675332 28 100.0 33 ............................ CGCGGCGGACCCGTCCAGCCCGGACACGTTCTA 675393 28 100.0 33 ............................ CGTGCTGTCGACCACCGAGGCTTGGCCCGCACG 675454 28 89.3 34 ...C..........TA............ TGCCCGGCCCGTTGTGCGGGTTCAGCTCCACGAC 675516 27 75.0 0 ...C...G....T.T..-......CC.. | ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.0 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GCGATCTATCTCGACAAGCCGCACGAGACAGCCGCCTACAACACCATCTGGGCCGACATGGCCAGCCGCGCCCTCAACGAGTCCCGATCCCAGAGCCTGATCCAGCAAGCCGCAGAGGAGTACTCCCATGCCTGACCTGACCGGTGCCGTCTGGCGCAAGTCGACCCGAAGCAACAACGGCGGCAACTGCGTCGAGGTCGCCGACAACCTCCCGGGCGTCGTCGGGCTACGCGACAGCAAGGACGTGGCCGGGCCGGTGCTGACCTTCACCCCGTCGTCCTGGGCCGCCTTCATCGAGGACGTCAAGGCCCAGCCACCTGGCCGCTAAAACTGGCAGGAGGCTGCGCCACGGTTCCTCTCCTGCCCACCGAAGATGCCGGTCAACTCGTAGGCTGTTCACCACCTAGCCTGGACGCCCAGCCACCACTCAGGATGTGATCTTGGCCAGCAAAGTGAATGAAATCCGCCTAGTTGATCTATAGCGCCCCAGGTCAGGAAGC # Right flank : CTGTGTCCTATAGGTGTGAACCTGCCGCACTACGTCAGTCGGGGCGATGGCGCGCTGCGACTGTCAGCGACTACTATCGATCGGCGCAGTCGCGCACCGGTCGTGATGTTGCAGTGACCTGGAGTCATGGTGCCTCGTCCCGAACGCCAGATAGACCCTGAAGCGGGCCCCATCCAGTCGTTTGCCGCAGAGCTTCGACAGCTCCGCGAAGGAGCAGGCTCGCCGAAGTACCTCCAGATGTCGCGCGCGTCGGGCCGGTCCAGAACCGCCCTGGCCGAAGCTGCCGGCGGCGATCATCTGCCCACCTGGGAGACGGTCGAGGCGTTCGTCAGGGCATGCGGCGGCGATGTCCGTCAGTGGCGGGTGAGGTGGGAGACGGCGCAGGAGGCGATACGGCCGGCAGAGCCGCCGTCACGCAGTGGCGCGGCAGCTACCGTCGCCGATCTTCCTGACGATGCGCCGCCCCTGGTCGCCGGACGGCCGGCGATCCGCCGTCGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 840231-840564 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOL01000001.1 Micromonospora sp. NBRC 110038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 840231 28 100.0 33 ............................ CGCGGCGGCCCGCCGCCCGGCCCACCGGGGCCA 840292 28 100.0 33 ............................ CGGCACCGGCAAGGCCGCCCAGGCCGCGAAGAA 840353 28 100.0 33 ............................ CCGCAGCTACCACGCGCTGAACCGGGCGGTGGA 840414 28 100.0 33 ............................ CGGACGCGGCGCCATGGTGGCAACCGCCCAGTG 840475 28 100.0 33 ............................ GGTCACTTCCCTCACGCCGTTGGCGACGGACAC 840536 28 92.9 0 .......................A...T | T [840558] ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CTTGATCCCTGCGCGGGCGGGCCCCGGCGAACCCCTGACGTGCTTGCGGTCCGTACGAGCACTCTCTGGCGGCGGGCTTGGCAGCCGGGGAGCAAGATCGTGCTCGATCAGGGAAAGAGTCCCCATACTGCCGGTGGGAAGCCACACTTTCGTGGATCGAGCACGATCTTGCGAGCTTGCCCCGCCCAAGGGCGGCTTCGGGATGCCGTCCGACGCCGGAACTGCGAGATCTTGGAAGAAGGTGGCCCCTCTGAGGGCCCAAATCTTCCAAGATCTATGTGGACCTCGCTTGTCGGCAGCGACGCGATCCGTCTCTGGTGGCGGCGATCCTGCTGCCTACTGTCTGAGGGCGGGTGCTGTGCTTCTCCCAGACATCGACATGCCCGTTAGGCTGTCTTCGCTCTACTTGCCTCAGAAGTCGACTCTCGCAGGAGGCGATCTTGTGGTGCAAAGTGAAGGAAAACGAGGTAGTTGATCTTTAGCGCCCCAGGTCAGGAAGC # Right flank : TTCCAGCGGCCCGCCTGGCTGGTCTAGCCAGTTGTTCCTGCGTGGGTGCTAGATGACATGGACTCTTGCGGATTACCTCGGCGGCGCAGGGAGTAGCCGGTGGAGCGGTGCGCGGCTGCCGTGGCGCTCGAATCACCACCGCCTGCGCGCGGAGCGGGGCCAAATGCAGCCCTGCCCAGCCGGCCGGTCGGGATCACCCCCGCGTGCGCGGGGAGCAGCTGGGCATCACCGTCTACGACGCCCAGGGCCAGGGATCACCCCCGCGTGCGCGGGGAGCAGCGCCGCCGCCGCCGCCAACTCCTCCGGGGTGGCGGGATCACCCCCGCGTGCGCGGGGAGCAGGCCATCCCACCGGACACCGACGCGTCGCTGTTGGGATCACCCCCGCGTGCGCGGGGAGCAGGCTTGCTGACCTGGGGCGCTAAAGATCAACTACCTCGTTTTCCTTCACTTTGCACCACAAGATCGCCTCCTGGCTGCGACCGTTCGGCGGCGCACGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 840966-840632 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOL01000001.1 Micromonospora sp. NBRC 110038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 840965 29 100.0 32 ............................. AACAGCGACGCGTCGGTGTCCGGTGGGATGGC 840904 29 100.0 33 ............................. GCCACCCCGGAGGAGTTGGCGGCGGCGGCGGCG 840842 29 100.0 32 ............................. TGGCCCTGGGCGTCGTAGACGGTGATGCCCAG 840781 29 100.0 32 ............................. GACCGGCCGGCTGGGCAGGGCTGCATTTGGCC 840720 29 79.3 32 .C.....G......G....T......T.G AGCGCCACGGCAGCCGCGCACCGCTCCACCGG 840659 28 75.9 0 ..A.....T....-...C.A...A....G | ========== ====== ====== ====== ============================= ================================= ================== 6 29 92.5 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : ATTGGCAGACGGTAGCTGGGTGGGACATATCGACAATCAGCTTGGCGGCTCAGTGGTCAACGGGGACGAAGGAGTGGCTACCCTTCTGACAAGGTGGGAGGGCGTTCGGGGACTCGCCCTTCCGCGCAACCTCTCGGGTGCCCTGGTGAAGGAAGTAGAGAGCCAACATGGACCTCAGTAGCGCAAACTGGAAGAAGTCCACCCGAAGCAACACCGCTGGCGGCGAATGCGTTGAGGTGGCCGACAACCTGACCGGTGTGGTCGCCGTCCGCGACAGCAAGGACCCGTCGGGTCCAGTGCTCGCCTTCTCCCCGCAAACCTGGCGCGCGTTCGTCGAGCACACCAAGCACCCCTAGCCTCGCCCTGGCCCGCGCGCGAGGCCGCCCGCTGACAGCGCAGCCTCGCGTGCGCCGCCGAACGGTCGCAGCCAGGAGGCGATCTTGTGGTGCAAAGTGAAGGAAAACGAGGTAGTTGATCTTTAGCGCCCCAGGTCAGCAAGC # Right flank : CAAGAGTCCATGTCATCTAGCACCCACGCAGGAACAACTGGCTAGACCAGCCAGGCGGGCCGCTGGAAGATTAACCCCCGCGTGCGCGGGGAGCAGGTGTCCGTCGCCAACGGCGTGAGGGAAGTGACCGGATCACCCCCGCGTGCGCGGGGAGCAGCACTGGGCGGTTGCCACCATGGCGCCGCGTCCGGGATCACCCCCGCGTGCGCGGGGAGCAGTCCACCGCCCGGTTCAGCGCGTGGTAGCTGCGGGGATCACCCCCGCGTGCGCGGGGAGCAGTTCTTCGCGGCCTGGGCGGCCTTGCCGGTGCCGGGATCACCCCCGCGTGCGCGGGGAGCAGTGGCCCCGGTGGGCCGGGCGGCGGGCCGCCGCGGGATCACCCCCGCGTGCGCGGGGAGCAGGCTTCCTGACCTGGGGCGCTAAAGATCAACTACCTCGTTTTCCTTCACTTTGCACCACAAGATCGCCTCCTGCGAGAGTCGACTTCTGAGGCAAGTAGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1364159-1365043 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOL01000001.1 Micromonospora sp. NBRC 110038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1364159 28 100.0 33 ............................ GGTCCCGGGGGTCGGCTCGGTGCCCTCCGTGTG 1364220 28 100.0 33 ............................ CGACGCGCCTTGCCCGGGCCCGTTCGACGTCAG 1364281 28 100.0 33 ............................ GTGGCGCGGCGAGTACCTGCGCGCGGTCGCAGA 1364342 28 100.0 35 ............................ CAACCCTTGGGCCTGCTACAGCCCCAGGATGCGAC 1364405 28 100.0 33 ............................ CGCTCCAGTCTCGCCGGCGGCGAGGGACTGCGC 1364466 28 96.4 33 ..............T............. CCCGCCCGGGCCGAGGACGGCCAGGTGCCACTC 1364527 28 100.0 33 ............................ CGGCGTCCAGCGCGCGTGGTCGGCTGGCGTCGA 1364588 28 100.0 33 ............................ CTCGTCGATCACGGTCACGTCGAGGTCGTCTTG C [1364604] 1364650 28 96.4 33 ......T..................... CGTCCCCATGTCCCCGAATTCCGGCAACCCCTC 1364711 28 100.0 33 ............................ GCAGATGTGGGGCGTGGTCGACCGGACCCGCTT 1364772 28 100.0 33 ............................ GTGGGTCGCCCACTCCTCGGCCTCGGCGATCGC 1364833 28 100.0 33 ............................ GGAGGTACGCCATGCCCCCGTTCGTCACCACCT 1364894 28 100.0 33 ............................ CACCTCCAGCGCGGTCTGCGCCCGGTTGGTGCG 1364955 28 100.0 33 ............................ GGCCATTGAACTGTTGGAGGCCGCTGCCGTCAA 1365016 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 15 28 99.5 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGACCAGCTCACCCGGCAGAAGCTGCTGGTGCAGATGCAGGCGTTCCTGGCCCGCTGGGGCGACGACCGGCCCGCGCCGGTCGACGCGCCGGTGGCACCGACGCTCGACGCGGCCAGCGATGCCGAGCTGTTCGACTTCATCCACCGGGAGCTGGGCGGCCCCGACGGCAACCTGGGTGGAGGCTTCTGACCGATTCGACCGCCTGGTGAGGCTTCCGTTGGCGGTCGTTGTGGAGAACGACAGATAGAAGCCAGGCCGCCCCTTGCCGGGTGGCCTGGGTTAGGGCTGCCTCCGGCGGGGGCCAACGACTCCAGGATGGAGTTGCCGAACGGTGGCAGTCGTGGGTGGTGGGGATGGTAGGAGCGGGGGCGAGTGCGCGCCAAGCGCGGCAAGTCAGCGGTACCTTGTCACCAGCAACCGGCGGACGGGTGGAGGGATCTTGGGCGGGCAAGTGAATGAAATCGGCGTTGTTGATCTTTAGCGGTGCAGGTCAGGAAGC # Right flank : CGCGTTTGGGCGTGACCGAACCAGGGCCGATGCGAGCTGACAAGCGCCGACGTTCCGACCATGCACGGACCTATTCGACCAGCCATCCATGATCTTCTCTCATCGTACTGACCCGATCTGCTCGACCTGGCGGGTGAACTGCTCTTGGGGGATCTTGGACACCTCCTGTCTACATGGGACGATAAGTGTCCAAGGTTGTCGGGGCGGGGTGACTCTTTATGGGCCGGTGCAGCACCCATATGGCGATGACGGCGACGAACTGTCCTGAAGAGGGCGGCGCTTCATTCGAGTCGTGGCCCGTCCGGCCGCCGTTGTGGCTACTCAGCTGAGGCAGCCGTCAACAACCAGGAGGCCACAACACCATGGCCGACTACATTTTCAGCGACGGCCCTGGCATGAACGCTGTCATCATGGCGCTCGCCGACGCCCTCTACGAGGCGGCGACCGACCAGGGAGCGGGCGCGTGAGCGGGGCAGCCTCGGGAGAGGACCACGCGGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 494670-495914 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOL01000005.1 Micromonospora sp. NBRC 110038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================== ================== 494670 28 100.0 33 ............................ CGGCGGTAGCCCGTCGTCCGGCGGACCCCCTTC 494731 28 100.0 33 ............................ CGTGTCAACCACCAGCGCGCGAATCTGGCTGAC 494792 28 100.0 33 ............................ GTTCTATAGCGCACGGTCTGTGAAGTCAGGGAT 494853 28 100.0 33 ............................ GGCCGCCGACGGGATGGACGACCTCGGCGACTC 494914 28 100.0 33 ............................ CATGTGCCCGAACGGCAGCATCAGCAGCGCCAG 494975 28 100.0 33 ............................ CGCCCGGTCCTTCGCCGACGGCGGCGGCTTGCT 495036 28 100.0 33 ............................ CGACGACCCGGCCGAGGTGCCTGTTCTGCACGC 495097 28 100.0 33 ............................ GGAGCCGAGGGCGTCGCCAGCGCGGACAAGAGC 495158 28 100.0 33 ............................ GTGGCTGGCGTTGATGTCGTCCTCGGGCAGCGG 495219 28 100.0 33 ............................ CTCTTCATCGACCGGGGAACGAAAGATGACGTG 495280 28 100.0 33 ............................ CTGGGCCACGTACGAGTCGTAAACCCCTGTCGC 495341 28 100.0 33 ............................ CCGCCGCGATCGGCAGCCCGCTGCCCAGACTCT 495402 28 100.0 33 ............................ CTCCAGACATCCGGCACCAGCCGGTGCGACCCG 495463 28 100.0 33 ............................ CGTGCGTCGCGGCAACGCGACCGTGGGCGAGCA C [495468] 495525 28 100.0 33 ............................ CCGGGCCGTAGCCGCCGCCTCGACGTCGGCGAC 495586 28 100.0 33 ............................ CCCCTTCCGCCTCCGTCGCAGTAGGCGCAGAGC 495647 28 96.4 33 .........................G.. GCTCTCGTTCTCGCCGTCCGCGTCGACGCCGAG 495708 28 100.0 33 ............................ CACGCACGCCTGCTGGGAGGCTCGACGTGCCCT 495769 28 96.4 90 .................C.......... GGGCTGATACTCCGGGTGCACGCGGCCGACGGGCTGTTCCCCGCGCGGGGGTGATCCCTCGGGCAGCGTGACGGGCGGCTGGTCGTGCAC 495887 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================================== ================== 20 28 99.6 36 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : GAGCTAGCCGCCCGAAACGCTGAGGGTGGCTTCTGGGTTTCGGCAGCAGACCCCGCGGTAGTTAGTCACGCAATCGTTGAAGCGGTGCCCATTGAAACCGTCACTCGGTCGATTCTGCTGACCGATGGAGCGGCAAGGCTTGTGCGCATGTTCAATGACGTTAGCTGGAGGGAAATGCTCGACCTGTTGGAGAATCAAGGGCCAAGCGAGGTGCTCCGGCGTGTGCGCCAGCTCGAAGAATCCGACCCGGTCGCCCTCCAGTGGCCGCGCAACAAGAAGAGCGATGACGCTACGCTCGTATACGTAGCCGACCCTCGATAGGTTTCCACTCTTCGGCCTGCCGCCCGGGCCGTCCGGCCACCGGGGGCGCGGCGCGCGCCGAGCTTGGCGAGTCAGCGGTACCCTCTCACCAGCAACCGGGCGGCACGGGCGGAGGGGTCTTGGTCGGGGAAGTGAATGAAATCGGCGCTGTTGATCTTTAGTGGTCCAGGTCAGGAAGC # Right flank : CGGCGGCGGAAACGCAGGACATCGTCGGCGGTGCCTGTTCCCCGCGCGGGGGTGATCCCGACATCACGGTCAGCGGCGGCCCTGCCCCGGGCTGTTCCCCGCGTGCGCGGGGGTAATCCCATGTTCCGGATGTCGGCCGGAGTGAACGTCTACTGTTCTCCGCGCTCTACCTTCGGTCCCTCCATGTCGTGTACGTGTCGGCTGTCACCGATCAGGTGCTATCGGGGCAGGTCAGGGCCGTGTGACTCTCGGTCTTGAAAACCGGTAAGGCAGCGATGTCTTCGTGGGTTCGAATCCCACACCCTCCGCTTCCTGGGCAGCGAAAACACCCATGAAGTGGTGCCGCGGCGCGGTGTGGTAGACCGCCATATCGCGGTATGGTGATTGTATGGCTGCTAGGAAGATCACCGTCACCCTCCCCGAAGAGTTGGTCGAAGCGCTCGGCGCGGCCGCTAGTGAGGATGGAGTGCCGCTGTCGAGGCTGGTCGCCAGCGCAGCGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 191584-191311 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOL01000009.1 Micromonospora sp. NBRC 110038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 191583 28 100.0 34 ............................ GGTGAAGCTGTCCCTGCCGCCGCCGGAGATCAAG 191521 28 96.4 33 .....................A...... GAAGCGTCTTGTGTTCGCCAAGACAAACAGCTT 191460 28 92.9 33 ........T............A...... GGACTGGGACTCGATGCAGTGAGCTCAGGTCAT 191399 28 92.9 33 ..A....................A.... ACCCGACTGCACCACGGAGGCGACGTCCGCCCA 191338 27 75.0 0 .C...T....T...-.......C.GC.. | A [191322] ========== ====== ====== ====== ============================ ================================== ================== 5 28 91.4 34 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GGGCCAGGCATCCAGTTGCTGCGCGTCGACACGACCCGCTTCGATCCGTGGTTCGTCGCCGGGGTCATCTCCCGCACGGACAACCTGCGCGTCGCCGGCCGTAGCTCCAGCACCGCAGGTGGCACACTGCGCATCGACGTACGACGCCTCACCATCCCGGTGCTGCCGCTGCACCAGCAGCAGGCGTACGGCCGCGCCTTCCGGCAGTTGGCCGAGTTCCGCAACGCCCTTGGGCAGGCGGCGACGACCGGTGCCACCCTGGCCCGCGAAATCGGCGACAACCTCGTCGTGGGCACCCTCGGCATCACGTCGCCCTCATCGGCCCATCCCGCCTGAGACCGACGGAGCCCGTGGCACCCCGGACCAGGACCCGAAAGGGATCCCACCGGTACGCTGAACTGACTGCGACCGATCGTCACACCCTTCGAACGGAAATGATCTTGCAAGGCAAAGTGAAGGAAAACGAAGTAGTTGATCTTTAGCGCCGCAGGTCAGGAAGA # Right flank : CTTGCAGATCAACTACGCACCGCCCAGGCCCTTCGAGACCATGCCCGGCCCCGGCATTGCTACGACTCGGCGACGAAGACGCCGCGCCCCGGCCGACCGACGAGGACGCCTCGCTGCCGCAGAGTAGCTATCGCCCGCTGGATGGTCGAGTGCGAGACGTTGTACTCGTCGGCCATGGTCCGGCCGGAGGGCAACTGCGATCCCGGCGGGTATTCGCCGCTCTTGATCCTCCTCACAAGATCGTCAAGCAACTCATCCATTGTGGGCGGTATAGGCACTTCATGCCCCTTGCAGTCGGTTGGCCCTCCCAGTATCGAGCCGCAATCTGAGGTAGGCAATGCACCTACTGAAGAAGGTGACGATGATGAAGGTGCCGACATAGCCGCAGGATCTGTACTTGACGTAGGTGATGCATGGCGCTAGCGTCGCCGAAAGTGACGTGCTCCATGCGGTCGGTTGGCGCTCTCCGTGCGGTCGCTCATCACCCCAGCGCATTCCCC # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 207760-208946 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBOL01000009.1 Micromonospora sp. NBRC 110038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 207760 28 100.0 33 ............................ GCTCGGCCGGTGGCTCTGTTGTTCACCACCTCG 207821 28 100.0 33 ............................ CGTCAACCTGACTGCCGGTGCGGGGCTCCGGGT 207882 28 100.0 33 ............................ CGTGCTGGACGCGGGGGAGTCGGGGCAGCTCGT 207943 28 100.0 33 ............................ CTGCTTGTCGTTGATGTAGACCTGATAGCCGTC 208004 28 100.0 33 ............................ CTCCTTCGTCGCGTTGGTCAGGGTCCGCAGGAA 208065 28 100.0 33 ............................ CACGTCGGCGGTCTGCCCCGTCTCGGCGGCCAT 208126 28 100.0 33 ............................ CGCCCGCAACGCCGCCAACCTCGCACACCTGAG 208187 28 100.0 33 ............................ CTGCTGCGGGAGGGCGTTCGGCACGCCGGGGAC 208248 28 100.0 33 ............................ CTCCTCGATCGTTCGCCACTGGCCCGGCGACAG 208309 28 100.0 33 ............................ CGGTATTGCTTGGCTTGATGGTGATGACACACC 208370 28 100.0 33 ............................ CGGGCCCCCTTCCTCCGGGGGCCCGTTCTGCAT 208431 28 100.0 33 ............................ GTCGGCCTGATCGCCCGCGCCGGCCGGACCCCG 208492 28 100.0 33 ............................ GTTGGGCCGGGCCTCCAGGTCCGCCGCGACGCC 208553 28 100.0 33 ............................ GTTCACAATCCGTGATGATCGAGAACCCCTCCC 208614 28 100.0 33 ............................ CGCCGACCACAACCGCGGTGACCTGACCTTGAG 208675 28 100.0 33 ............................ GGGGCGTGACCGGGATGCGGCGCCGAACCCGGA 208736 28 100.0 33 ............................ CGCAGGGAGGGGTCCTTCGCCGTCGCGGAGGAC 208797 28 100.0 33 ............................ CGGGAACGCGGGGCACGGACCCAGGTGCTGGAG 208858 28 100.0 33 ............................ CAGGTCCGGGCGCTCGGCGACCACCTGGGCGTC 208919 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TGTGGGACGAGGGAGGCTACGAACTCGCTGGCGGCCGGAACTACTCCGGGGACGTGGACTTCTGATGACCGTCATCATCCTCACCGCCTGCCCGGAAGGGCTGCGTGGGCACCTGACGCAGTGGCTGCTGGAGATCTCTGCCGGGGTGTACGTGGGACACGTGAACAGCCGGATCCGACAGCGGCTCTGGGCCAAGGTCGTCGAGATGGCCGGGCCAGGCCGGGCACTGCTCGTCTACAAGCGGCCAGGCGAGCAACGACTGACCTTCGAGGTACACGACCATCACTGGGAGCCGGTGGACTTCGACGGGATCACGCTCATGCGTCGGCCTACGGATCGGAGTTCGTACAACCCAGCAGTGGGGCGGGGATGGAGCAAGGCGTCCAAGCGTCGGAAGTTCGGGCGGAGGGCCCCAGATAGGGGCAGCGGATCGTCCGTTCCCTCCGAACAAAGTGAAGGAAATGGCGGTAGTTGATCTTTAGCGCCCCAGCTCAGGAAGT # Right flank : CTCAGTACGTCATTCGGAAGCTCAGGGCCGCCTGATCACTGAACGCTCGGCGCGGTGCGTAGTCGCTACATGCCGTCGTCGTAGCGTCAGCTCGTGGCGGTACGGTGACCTTCCGTGGCCCGAGCGGGCCGCGCTCACAGGGAGGTGCGCGATGGGAGCGCCGGACGTGGTGGCCCAGCCGGTCGCCGGGCTCAACGAGGTCGACCGGCCGCTGTTCACCTTCTGCGACGACGCGACCGGTGACCGGGTCGCGCTGAGCGCCGCTGACCTGGGCGGCTGGGCGGCGCGCACCGCGGGGCTGTTGCGCGACGGCTGCGGGCTGGCCCCGGGCAGCCGCGTCGCGGTGCTGCTGCCGCCGCACTGGCGTACCGCCGCAGTGTTGTTGGGCGCCTGGTCGGTGGGGCTGGCCGTGTCGTTCCGGCCCCGGGCCACCGCCGGGTTGCCGGTCCTGGAGCCGGGCGGCGACCGGCCGTACGACGCTGTGTTCGTCACCCCGGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //