Array 1 294201-294900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACOQ010000004.1 Escherichia coli strain 1110b 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 294201 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 294262 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 294323 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 294384 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 294445 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 294506 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 294567 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 294628 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 294689 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 294750 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 294811 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 294872 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320601-322154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACOQ010000004.1 Escherichia coli strain 1110b 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320601 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 320662 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 320723 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 320784 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 320845 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 320906 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 320967 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 321028 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 321089 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 321150 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 321211 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 321272 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 321333 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 321394 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 321455 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 321516 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 321577 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 321638 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 321699 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 321760 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 321821 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 321882 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 321943 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 322004 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 322065 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 322126 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //