Array 1 439544-440974 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIE01000001.1 Salmonella enterica strain BCW_5863 NODE_1_length_564041_cov_4.52122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 439544 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 439605 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 439666 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 439727 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 439788 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 439849 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 439910 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 439971 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 440032 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 440093 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 440154 29 96.6 32 .....................G....... AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 440215 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 440276 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 440337 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 440398 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 440459 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 440520 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 440581 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 440642 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 440703 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 440764 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 440825 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 440886 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 440947 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 457107-457624 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIE01000001.1 Salmonella enterica strain BCW_5863 NODE_1_length_564041_cov_4.52122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 457107 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 457168 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 457229 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 457290 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 457351 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 457412 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 457473 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 457534 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 457595 29 96.6 0 .....T....................... | A [457622] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //