Array 1 537779-537150 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCDS01000002.1 Mannheimia varigena strain OADDL-MV1 NODE_2_length_874828_cov_69.376076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 537778 32 100.0 33 ................................ TACCTCAAAATCAAAAACAGGCTTCATACTGCA 537713 32 100.0 34 ................................ ACGCAAAACGATTTAAGAACCGTCTTGCCAAATG 537647 32 100.0 34 ................................ CACGAAGTCGGACACAGCACGAAACATTTAGGTA 537581 32 100.0 34 ................................ TGAACGACCGAACCAATATTTTTGCTTGAGTATG 537515 32 100.0 34 ................................ TGTAATGATGGGAATAAAAGAAGGCTGGAACAAT 537449 32 100.0 36 ................................ GCCACGCAAGGGGGCGGTGTAATTGTGGGTATGTGT 537381 32 100.0 34 ................................ CACGAAGTCGGACACAGCACGAAACATTTAGGCA 537315 32 100.0 36 ................................ GTACTGTTTTAGGCTCTTATGCGAGAGCGTTGCGAG 537247 32 100.0 34 ................................ CGCTTGCACGCATTGATCGCAGATTGCTCGGTGG 537181 32 81.2 0 .............C.......CA.C..A...T | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 98.1 34 GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC # Left flank : CTCGCAAAGGCTTAACCATTCAACGCTATAAAGGATTAGGCGAGATGAACCCGGAACAATTATGGGAAACCACGATGGATCCGGTCGCTCGCAAAATGTTGCAAGTAAACATCACCGATGCTATCGCTGCCGACAAACTTTTCAGCACCCTAATGGGCGATGAAGTTGAACCACGCCGCGATTTTATCGAGACTAATGCGTTATATGCCCAGATTGATGTGTAGTTTAAAATTAAGATCCTCTATTGAGAAATAGAGGATTTTTTATAAAAATTATCTAAGTATCCTACAAATACCATTGTAATATATGAATTCGCTAACCTATAGTTCTCATTAAAATTATAGTAGGTTAGCGATTTTATTTATTCTTTTATAATCAATATGTTATAAATTTTACCTTAAATAATTTTGATTCTGTTATACTAGAGCAACTCGTTGTATAAGAGCTTAGCGAAAATGGCACTAATAGGCCTTGTAGCATAATGATTTCTTATATAGGGA # Right flank : TTCCTATTTCTACCCCTTCTAAAATAAAACAAGGATTTTTGTTTTTCTATCCAAAATGGTACACTTCATTGAAATGAATCACTAAGGATTTTCAAAATGAGTAGTACAGAATTATTAGTCAATGTTACCCCAAGTGAAACAAGGGTTGCGTTGGTTGAAAATGGGCTATTAAAAGAGTTGCATATTGAGCGTGAGGCCAAACGTGGCATTGTGGGGAATATTTACAAAGGGCGTGTAACTCGAGTATTGCCCGGAATGCAATCTGCTTTTGTGGATATTGGCTTAGAAAAAGCGGCTTTTTTACACGCCTCCGATATTGTTTCTCACACTGAATGTGTTGATGAAAATGAGAAAAAGCAGTTTGTAGTAAAAGATATTTCAGAGTTAGTGCGTGAAGGGCAAGACATTGTTGTTCAAGTGGTAAAAGATCCGATTGGCACAAAAGGTGCTAGACTAACTACTGATATTACCTTGCCTTCTCGTTATTTGGTTTTTATGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 707230-706124 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCDS01000002.1 Mannheimia varigena strain OADDL-MV1 NODE_2_length_874828_cov_69.376076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 707229 32 100.0 35 ................................ TGGGCTTTGTCGTCTGAGTCAAACCACTTGCCTAA 707162 32 100.0 37 ................................ ATCCGGTTTCTCGTTTAGATGAAAATGTGCAGCTGGT 707093 32 100.0 36 ................................ AGAAAAAATCAATCGAGATGAAAACTATAAAAATGC 707025 32 100.0 35 ................................ ATCAATATAATAACGGTTCGGGCGATAAAAAGGTC 706958 32 100.0 35 ................................ AAATTTGAGAATGGAGCTGAAATTACCCAAATCAA 706891 32 100.0 34 ................................ AAAGTCATTGCCATCACTGTCTTTGAGTACAGCA 706825 32 100.0 37 ................................ TCGCGATAAATAAGATGGAGCAGAGAACCTACACGCC 706756 32 100.0 36 ................................ GTGTAACTTCCACTTAGTCGCCACGTTTTGCAAAGT 706688 32 100.0 34 ................................ CTTGTCCTTTAAAAGAGCCACAAGATGAAATGTG 706622 32 100.0 35 ................................ TCGACATCGCCCAGCACAATGGTTTTCGGCTTATA 706555 32 100.0 34 ................................ TAAATATTCTTGTAATTGCATACCTTACCTTTAA 706489 32 100.0 34 ................................ CAGTCTTCTGCTGAGTAATGTGCAGTATGCCGTC 706423 32 100.0 35 ................................ AATTAAGCCAGCTAAACCACCGGCTTTATCATTGA 706356 32 100.0 35 ................................ ACATCAACTGTTGCAGACGATGTGCCAGATGCTTG 706289 32 100.0 35 ................................ ATACAAGTGCTGTAGTTGGACTATTTTTAGTTGCT 706222 32 100.0 35 ................................ AACCCCTTTTTCTCTATCTGTTAAAGACATAAAAA 706155 32 68.8 0 ..G.TT..C...A...A..CA.A........T | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 98.2 35 GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC # Left flank : GCAAAGCTATGATGATGTTGATTACCTACGATATTTCTTTCGATGACCCCGAAGGGCAGAAACGCCTTCGCCACATTGCCAAACATTGCCTCGACTACGGCGTGCGAGCCCAATATTCCGTATTCGAATGCGATGTCACCCCCGACCAGTGGGTCAAGCTCAAACAAAAACTGCTGGCGACTTATAACCCTGAGCTTGACAGCCTCCGCTTTTATCACCTCGGCAGTAAATGGCGTAACAAAGTGGAACACCACGGAGCGAAAAAAGCGGTGGATTTGTTCAAAGATACACTGATTTTGTAATATGTAGTACATCGCTAACCTGTTGTTCTCACCAAAACAGGGGGAGGTTAGCGATCATCAAAGTTCTTTAATAATCAATAAGTTATAAAAAGTATTGGCTCAATTTGAATTGTGCTATACTAAAAATACTTCCTATACAGGCGTTTAGCGAAAAGGCGGTAACAAAGCCTTGCAGCACAATGCTTTTGCATATAGGGA # Right flank : CTTGGCATTCAGATATAATTTCTTAGACATTTTGTAGCTATTTTCATGTCACGATAATTGGAAATATAAATAAAGGTGCATTGCTGCACCTTTATTACTATTATTGAACCGTTGCTTTAGCACGCGACTTTTTCACTTTGATTTCCGCTTTCGGCAATACTTCAATTCCTATCGGTGGGTTTTCAAGAGCAATTGCAAGCACTTCATCAATCGTCTCTACGGCGTGAATACGTAATGCTGCTTTGGCATTTTCCGGAATTTCCTCCAAATCTTTTTCATTCTCTTTTGGAATAATAATCGTTGTAATACCACCTCGGTGGGCTGCAAGTAATTTCTCTTTTAAGCCGCCGATTGGCAATACTTTTCCACGTAGGCTGATTTCGCCTGTCATTGCGACTTCTTTACGAACAGGGTTACCTGTTAGGCTCGAAATTAAAGCCGTACACATTGCGATACCCGCACTAGGGCCATCTTTCGGCGTTGCACCGTCTGGAACGTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //