Array 1 2876-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMHZ01000025.1 Kocuria indica strain DP-K7 25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2875 28 100.0 33 ............................ CCGAACTTCTCACCCAGGATTGGGAGCACCGGT 2814 28 100.0 33 ............................ ACGCCACGCATTGATCACCGGGTCGTTGAAATT 2753 28 100.0 33 ............................ TCGTAAGCGGTGATGGACGGCCACCAGTCCCAG 2692 28 100.0 33 ............................ CTGCCCTACAGCACGAAAGTTATGGCCGAGAAG 2631 28 100.0 33 ............................ CAGCATGCACGCGTGGGCCGGGGGTGATGCTGC 2570 28 100.0 33 ............................ GCGGTTGTCCAAAAAAGTTTTGGGGGACTTTCT 2509 28 100.0 33 ............................ CAGGTAATCGCCCACTAGATGCGCGAGCAAAAT 2448 28 100.0 33 ............................ GAACGACAGGTCGCTCATAGCTGGGGCCTTTCT 2387 28 100.0 33 ............................ GATGCCTGCCCGCCCGTTTATGGGTGAACCGAC 2326 28 100.0 33 ............................ GTCGTCCGAGCTCCACTTCTGGCCGGCGTAGTG 2265 28 100.0 34 ............................ ACGTCCAACGGGTTCGGGACGGTCGGCAGGTACG 2203 28 100.0 33 ............................ TTCCCTTCGGGGCGTCCCCACGAATCCCCGAAC 2142 28 100.0 33 ............................ GTCGGCCCTGCTGCTCGGGTACAGGATCACCCA 2081 28 100.0 33 ............................ TGACTTCGGCGCAATCTGGTTTTTGAACCACAC 2020 28 100.0 33 ............................ CCCCTTGAGGGGGGTTTCCGCGAGCGTCCAATA 1959 28 100.0 33 ............................ CGCGGCACCAACGGATTCGGGAGCACAGGACGA 1898 28 100.0 33 ............................ GTACATCGACGCAGGGCAATGGTCGTACGGCTA 1837 28 100.0 33 ............................ CGGGTTGGAGGTGTTGCGCTGATGCTGGGCGCT 1776 28 100.0 33 ............................ CATGCCCCGCCCGACCAACCAAGGCGTGCACCG 1715 28 100.0 33 ............................ CTGAACTTCGGGGAAGGCACCCCGTACCCTGTC 1654 28 100.0 33 ............................ CGACCTCGGGGTGGAAGCCACGGTAAATGAGGC 1593 28 100.0 33 ............................ GTCCTCTGTGAGTGCGGTGGGGTCGTAGTAGTT 1532 28 100.0 33 ............................ CCGGTCAGGGGTGACCCACGTTTCAACGGTTCC 1471 28 100.0 33 ............................ TGAGCGAACAGTGGATTTGTGGGCACTGTGACC 1410 28 100.0 33 ............................ CTCGTTCTCGAACGTCGTGGACTCAAAATCAGC 1349 28 100.0 34 ............................ TGCTTGCTCGGTGTCCGCGCTCTTGGCCGCACCC 1287 28 100.0 33 ............................ CGCCGTATCACCGACCTCGAGGGCGCGCTGGCG 1226 28 100.0 33 ............................ TCGGGTCCCCAATCTCGAGGATCGACCCCTCCA 1165 28 100.0 33 ............................ CCAGGCGTAGACGGATCCGCCGTCCCAGCACCC 1104 28 100.0 33 ............................ CCACGTGGCGGAGCTCCCCACGGGGGAAGCCGC 1043 28 100.0 33 ............................ TGACCGGTACGAACACGGACGAGAAGGACACCT 982 28 100.0 33 ............................ GTGGACCACGTCTATCCGGTGTCCACTCATCCC 921 28 100.0 33 ............................ TGTGCGCCACGGCCAGGGGCTTCACCGGGCCGT 860 28 100.0 33 ............................ GCCCACACCGAACGCGACAACGACGGCGCCGCT 799 28 100.0 33 ............................ CGACCCCATCAACCATCCCCCGCACTATGCGAC 738 28 100.0 33 ............................ CCCCCAAGCTCAAACCCGAGGACGTTGCAACAC 677 28 100.0 33 ............................ GATGGTGCAGTTGATGTTGGGGCACGCCTCCGC 616 28 100.0 33 ............................ TGGACCGGCGCGGACGCCGAGACCGCGTTCCGC 555 28 100.0 33 ............................ TCGTAGGCGGTGATGGACGGCCACCAATCCCAG 494 28 100.0 33 ............................ CTCCCACACGTCCCCCGTCCACGATTGCAGCAC 433 28 100.0 33 ............................ TGGGAAAACCCGGACGACGTGCAGATGACCCCC 372 28 100.0 33 ............................ CACTCTTTAGTTTAGTTGCGTTCAACTCGGAGC 311 28 100.0 33 ............................ CGTGGCTTGGTGGCAACATCATGCTGGTTATCG 250 28 100.0 33 ............................ AGCGCCCGCTGCTCCCAGCCCGATGAGTAGGTC 189 28 100.0 33 ............................ CGCCGCCCGCAACGGGGTGATGTGGCGTGGCAC 128 28 96.4 33 ...............A............ CTTGGTTGCGGTGGATGGCCAGCTCCCTGGAAA 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 47 28 99.9 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CATCCTCTACGAGGACGCCATGTCCATTTGGTCGGGACGAGCGGATTCGACGCTTGCCGCGGGACAGAACCATGACAGGGGCCGAACATGATGGTCCTGGTGCTCTCTGCCTGTCCCGTGGGGCTCCGAGGCGATCTGACCAAGTGGCTGTACGAGGTTTCGGCAGGCGTGTTCGTGGGAAAAGCCAGTTCCCGAATACGTGAACACCTGTGGGACAGGGTGCTCGAGACCTCGGGTTCGGGGCGGGCGATCCTCATCTGGAGCTCCAAGGGAGAACAGGGCTTGAAATTCGAGGTCAAGGACCACCACTGGGACCCCGTGGACCTCGACGGCCTGATCCTGATGAAGCGGCGTTCCCGTACACAGAAAACGCAGCCTCCGGAGTTGAAACGAGGGTGGAGTAAGGCCGGTGCGCAGCGGCGTCTGGGACGTCGGCGATGAAAGTGCCGAAATCGATGCAAATGATCGTAGAGTGTCGATATAACCCCAGGTGAGGAAGT # Right flank : CCCACCCTTTGGTCTTGCCGATCATCGCATCCGGGTGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1776-2595 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMHZ01000028.1 Kocuria indica strain DP-K7 28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1776 28 89.3 33 TCA......................... GGCGCGGTCATGCGCGTGCAGCCGGGGTGATCC 1837 28 100.0 33 ............................ CGGACCTTGTGGGGTGCGACCCGTGGCGAGCTG 1898 28 100.0 33 ............................ CTGGTCCGCTTCGTCCGCCGTCAGCGCCTTCAT 1959 28 100.0 33 ............................ CAGCGACCGGGATTTGTGGGAGACCGACCAGAC 2020 28 100.0 33 ............................ CTCGGCGTTGAGTTCGTGGACATGGGTGTAGAC 2081 28 100.0 33 ............................ ATGGGATACCGCATACGGGTGGACTGTGGCCGG 2142 28 100.0 33 ............................ CGCGCCGCGTTTCCCGTCCAGGGTGCGGATGAC 2203 28 100.0 33 ............................ CGCGGCCTGTCTGCCCGCTGTGGGCGCGAGCAC 2264 28 100.0 32 ............................ GTCCGCCTCGGCTGGGGTGGGGACGGTAAGCC 2324 28 100.0 33 ............................ CGCTCCAGCGGGGTCCACGACACGGAGCGTAAG 2385 28 100.0 33 ............................ CACATCACGGGAACCGTGCAGGCCCAGTGTCAC 2446 28 92.9 33 ...T......G................. GGGCACGATCCGCACCAGTGCCACCGCCCGCGC 2507 28 100.0 33 ............................ GTGTTCTTGGGGGACGCATGTGCCGCGGACCTC 2568 28 96.4 0 ..............C............. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.5 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CTTCCCCAAGGGCACTGACCTGTCGAGCTGGTCGGCCGAGGAGATTGAAGCCGTCGCTCACGCACTCAACACAAGGCCCCGCAAGACGCTGGGCTGGAAGACCCCTGCCGAGGCCTTCAACGAGCAGCTACTGTTGCTCCAACAAGCCGGTGTTGCAACGACCGGTTGAACCTGGTCAGTACGTCAATCTGGCCTACTCGGATGCGTTGATCGCCGCCGGAGTGAGCGCCTCGGTGGGCACGGTCGGGGATTCCTACGACAACGCCCTGGCCGAGACGGTCAACGGGCTCTACAAAGCCGAACTCATCCACGCGAAACGTGTGTGGGAGTCCACCGAGGCGGTGGAACTGGCCACGATGGGGTGGGTGCACTGGTGGAACACCGTCCGTCTGCACGAGGCCCTCGGCTACCTCACGCCCGCGGAGGTCGAAGTAGCCTACACTCACGACCACGACGTAGCGCCCGTTGCGTCCTGACCTCGGAACGAAACCCAGGGCGCT # Right flank : CCCAATCACTCCCGCCCCTTGTGTGGACGCCCCACCGATCCGCCGGTACCCGCGGCTCACCCCACCGACCCCGGCTCGTCCCGCGGGATGGCCAGCGTCGCGGCGGCCATCAGAACGGCGGTGACCGCCGCCGCCACGAAGACCCATCCGGAGGCGTGGATCACGGTGGCGGGATCGCCCTCACCGCCGCCGGCGCGGATGAGGTTGGTGGCGATGGCGCCGTAGATCGCCACCCCCACGGCTGACCCCGCGGAGCGGGCGAACATGTTGAGACCCGTCACCGATCCGCGCTGGTTCCACGCCACCGAGGACTGGGCCATGATCAGTGACGGCGCCGCGGTGTAACCGAGTCCCAGCCCGATGATGAAAGCGCACACGGCCATACCGATCACGCTCGGCCACGGTGACAACGCGGCGGTCAGGGTGGCTCCCACGATCGCGATCGCACCGCCCAGGAGCACGGTCCGCCGGAAGCCCCACCGCATGTAGATCCGTCCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //