Array 1 79485-77832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAS01000006.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N20272 N20272_R1_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79484 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 79423 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 79362 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 79301 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 79240 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 79179 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 79118 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 79057 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 78996 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 78935 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 78874 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 78813 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 78752 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 78691 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 78630 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 78569 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 78511 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 78450 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 78389 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 78328 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 78267 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 78206 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 78145 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 78084 29 100.0 11 ............................. CGGCCAGCCAT Deletion [78045] 78044 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 77983 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 77922 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 77861 29 93.1 0 A...........T................ | A [77834] ========== ====== ====== ====== ============================= ================================ ================== 28 29 97.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 97078-95767 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAS01000006.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N20272 N20272_R1_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97077 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 97015 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 96954 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 96893 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 96832 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 96771 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 96710 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 96649 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 96588 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 96527 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 96466 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 96405 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 96344 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 96283 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 96222 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 96161 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 96099 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 96038 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 95977 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 95916 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 95855 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 95794 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //