Array 1 451922-453535 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZU01000001.1 Salmonella enterica subsp. enterica serovar Alachua strain 85-0191 NODE_1_length_679749_cov_3.6851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 451922 29 96.6 32 ............................A TTACCGTATGACAAGCGGGTAAAAAAAAGCCC 451983 29 100.0 32 ............................. AAAACATGCATATGGGCTGGTAACGGCTTTGT 452044 29 100.0 32 ............................. TCGTGACCATGAATAATGACGTCATCACCGCG 452105 29 100.0 32 ............................. TGCACATTATTTCAGGGCGAAATCTCGTCCGC 452166 29 100.0 32 ............................. ATGCTGGCGCATCATGTAAAATCGCGTGCCAA 452227 29 100.0 32 ............................. TCGGTTATTGAGGACGTCACCGACGACGCACT 452288 29 100.0 32 ............................. ACATTGAACCTCCTCAATAGGGCAGGTCGTTC 452349 29 100.0 32 ............................. GAACGACGACCAGATTAACGCCGGTCTGGAAA 452410 29 100.0 32 ............................. GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 452471 29 100.0 32 ............................. GCGCGGCATAACAGCACGGGCACGCCGCCAGG 452532 29 96.6 32 .................A........... ATAAATTATCGGGAAATCATAATCAGCGCCGC 452593 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 452654 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 452715 29 96.6 32 .............T............... GCGCAGTATCAGGGAACGGCCGTTATTACGGT 452776 29 100.0 32 ............................. GCAATGGCAAGTAGTTCTCAGATGAAAGTCAG 452837 29 100.0 32 ............................. CCAACGGACGAGATCCTGGACTGCGACGGGCT 452898 29 100.0 32 ............................. GAAAGATTCACATTTAAAACTAGTGATTTTTC 452959 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 453020 29 100.0 32 ............................. TCTGGTGATTTGAAAGACTGGCACGCAGAGGA 453081 29 100.0 32 ............................. AAGATACAAAAAAGTACACGTAAAGTGCACGT 453142 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 453203 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 453264 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 453325 29 100.0 32 ............................. TGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 453386 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 453447 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 453508 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCTAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 469794-470617 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZU01000001.1 Salmonella enterica subsp. enterica serovar Alachua strain 85-0191 NODE_1_length_679749_cov_3.6851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 469794 29 100.0 32 ............................. ACGAGTCGCAGGAGGGCGAAACCATATTATCC 469855 29 100.0 32 ............................. ACCCATATCAACGCACCGAAATTACGGACGGC 469916 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 469977 29 100.0 32 ............................. ACGGGGAGTCAGTCACATCCATTGAGGATGCG 470038 29 100.0 32 ............................. CCTCCAGGATACCCCCACCGATGAAGGTGGGG 470099 29 100.0 32 ............................. CAGTATTTCGGTATGGCTAGCCACAGCGCGAA 470160 29 100.0 32 ............................. AAATCATTCATCATCGCGATAGCGATCGAATC 470221 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 470282 29 100.0 32 ............................. AATGCTTTGGCAAAATCAATTCCCCCAATTGA 470343 29 100.0 32 ............................. TCCGGGCGTACAGATATCATGAGTTCTGACGA 470404 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 470465 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 470527 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 470588 29 96.6 0 A............................ | A [470614] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGTATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //