Array 1 938-3601 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNVU01000022.1 Candidatus Chryseobacterium massiliae strain CCUG 51329 CONTIG022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 938 47 76.6 30 TCCTGCTGCG.A................................... AGAACCGAAGGGAGTACCCAACCAAAAGAA 1015 47 100.0 30 ............................................... GTGAATGCTGGTTAGGAGGTGACGAAGAAA 1092 47 100.0 30 ............................................... TTACAACTATTTTTTTTCGTGCTGATATCC 1169 47 100.0 30 ............................................... TTTAACATCCGGAAGATGTAGTTATCATTA 1246 47 100.0 30 ............................................... CGACGGTTTATTTTACAATAGCATAAAAGT 1323 47 100.0 30 ............................................... TTTCTCTTAAAACTTTATGAGCGACATTTC 1400 47 100.0 30 ............................................... ATATGTTTCTGCCCGGAATGATTTGAGTTT 1477 47 100.0 30 ............................................... ACAATCTAGCACAAAAGCAATATGCAACTT 1554 47 100.0 30 ............................................... TTCAGTTATTCAAATACGACAGGAAGCGCA 1631 47 100.0 30 ............................................... TCAATTCTTTATAATAACGTGGAAGAGGCT 1708 47 100.0 30 ............................................... AGGCAGCGCAGGCAATATGATATCTGCTGG 1785 47 100.0 30 ............................................... TCGCAAGAGCGTTTTTGTTTGCAGTTGCGT 1862 47 100.0 30 ............................................... ATGAGCCGTAGGATGTAGTATATCACTTTT 1939 47 100.0 30 ............................................... TATATTCAGAACGCTGAAGAGTTCTATTGT 2016 47 100.0 30 ............................................... ACATGGTTTTGCGATTTTGTATAGAATTCT 2093 47 100.0 30 ............................................... TGTTCGCGCTTATAAGACAATAGCATTTTT 2170 47 100.0 30 ............................................... ACTTTTCCCATAAGACACGATAAGGGACGT 2247 47 100.0 30 ............................................... TTTCCATCATTTGACCACCATTAGAGTAGG 2324 47 100.0 30 ............................................... GAAGCATTTTTTTGAAACGAGGCGTATTTT 2401 47 100.0 30 ............................................... GTCTAAAAACTGCATTATAACACGCAATAT 2478 47 100.0 30 ............................................... CAAACAGAGTAGGAGTAGGAAGGGCGTTCG 2555 47 100.0 30 ............................................... ATCTTGCTTCATTGTGGAGTAAACCCGCGT 2632 47 100.0 30 ............................................... GATAGATCAGGAAAATCAAATTAGAGATGT 2709 47 100.0 30 ............................................... TTTATTTTACCATTTTCAATAACGTTCGGA 2786 47 100.0 30 ............................................... ATTTTGTTGCCAATTTGTCATATGTGGGCA 2863 47 100.0 30 ............................................... TAGCAAGAGCATTTTTATTTGCAGTAGCGT 2940 47 100.0 29 ............................................... TCTAAAAACTACATTATAACACGAAATAT 3016 47 100.0 30 ............................................... TTTCCTGATCTATCTGATTTACCTTATTTT 3093 47 100.0 30 ............................................... CCTCCATCATTTGACCGCCGTTTGAATACG 3170 47 100.0 30 ............................................... CCTACCGCTTCAAATGGCGCAGATCCTGCT 3247 47 100.0 30 ............................................... TCGAACGAAGAATAACCTCGCTTTTTAACA 3324 47 100.0 30 ............................................... TCATTATAAATTAGTGAGCTATTACTTCTT 3401 47 100.0 30 ............................................... GGTTGCCGGAAAATGCGACGGCGGAAGAGC 3478 47 100.0 30 ............................................... CCGCGTTAGTTAGGTCATACTTATCGCCGA 3555 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 35 47 99.3 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGGACAAC # Left flank : CCATAGCTTAATCAAAAGCTTTTCGTCGAATCCGCCTATGTTTTTCCTGCTGCGGATTTCAAAAATTATTATCCTTGGGACAGTAAAAGTTGAATGTGAATTGCTTTGACTCAGCCTAGCTTAATCAAAAGCTTTTCGTCGAATCCGCCTACGCCTTTCCTGCAACGGATTTCAAAACCATCATCTTTGGGACAGCAAAAGTTGAATGTGAATTGCTTTGACTCAGCCATAGCTTAATCAAACGCTTTTCGTCGAATCCGCCCACGCTTTTCCTGCAGCGGATTTCAAAAATTATTATCTTTTGAGACAGCAAAAGTTGAATGTGAATTGCTTTGACTCAGCCTTAGCTTAATCAAATGCTTTTCGTCGAATCCGCCTATGCCTTTTCTGCAGCGGATTTCAAAAATTATTATCTTTTGAGACAGCAAAAGTTGAATGTGAATTGCTTTGACTCAGCCATAGCTTAATCAAATGTTCTTCGTTGAATCCGCCTACGCTCT # Right flank : CCTCAAAAAATAATCTACTGGTTTTCAGTAGATTATTTTTGTTTTCAGGATTTAAAATTCAGAACAATTCGAGTTGTTGGAAGGTTGGTGGAGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATGTCTCCAAATTGTTTATCGGTAATGCACATAATAGCAACCTTTCCGGCTTTAGGAAGCATAAATTTTACTCTTTTGATATGAACTTCCGCGTTTTCGCGGCTCGGACAGTGTCGTACATACATCGAAAACTGAAATAAGGTAAATCCGTCATCAATCAGTGCTTTCCGAAAACGGTTCGCATCTTTCATGTTTGCTTTCGTTTCGGTTGGGAGGTCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCGTTCATTTTTGGTGACTATTGTTTGTTTATCGTAACGTTCGCAGCCCGAACTGAGTGGAGCTCTTTTTGCAGATTTTTATCCTTCGACTCCGCTCAGGATAAACTCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATGAAGAACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.90,-2.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //