Array 1 60459-61748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEX01000038.1 Neisseria meningitidis strain 1045_NMEN 200_61779_1625009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 60459 33 97.0 32 T................................ CGGGCATATTGGCGGTGCATTATCCCTTCCGC 60524 33 97.0 33 C................................ GTTACGTCACCAATACCATCAGCCATAGACAGG 60590 33 100.0 33 ................................. TCGCAAGGCAAGCACCCAAGCAAGCTGTACATT 60656 33 100.0 35 ................................. AATATGAATCGGCGGCTTGATTTCCTTACCCTGTC 60724 33 97.0 32 C................................ ACATATTTCAGCGTAAACGCTTCGTCAGAAGA 60789 33 97.0 33 A................................ CTTGACTCACTTGAGAAGAAACGCAACGAGATT 60855 33 100.0 33 ................................. GTTATTGTCGTAATGTGAGTAACGCCAGTGTTT 60921 33 97.0 34 T................................ ACAGGCGGTGTCTGGACGTTCACAACCGACACCG 60988 33 97.0 33 A................................ GGTTGACCTGTGTAACCCATTGTTGCCACGGCT 61054 33 100.0 33 ................................. CAATGGAATGTGCCTTTGTACTCGATGGTGAAG 61120 33 97.0 32 T................................ ACGGATGATGTTCATCAGGATAAATGGCGCGT 61185 33 97.0 33 T................................ CAGCAATGTTTGGAACAGTTTGCGGATAGATTC 61251 33 100.0 33 ................................. TAGCGTGTCATTTCGCTCCGCCTCTGTGTCGAA 61317 33 100.0 37 ................................. AATGGTTACCACATATTTACCGGCTTGGTTGATATAG 61387 33 97.0 32 C................................ CAACTCTCGATGCTAGAAGCAGACAAGTATCA 61452 33 97.0 32 A................................ CAACCTTGAATCGCGGTTTATTGAAAATAAAA 61517 33 97.0 34 C................................ CCCCTACTCCTTTTCACGTTGCCCAAATTCATCA 61584 33 97.0 33 A................................ CAGATGACGACAGAAAAACCAACAGGACGAGCC 61650 33 97.0 33 A................................ CATGTGTCTTGAATCCATTGGGCAACCGCTTCA 61716 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 20 33 98.0 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATATAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAGGACGCGGAAGGACAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAATATTCAGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGAATTATTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : AGCACATCTTGATACCACTGCCCAAGTTGAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 31-1761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWEX01000034.1 Neisseria meningitidis strain 1045_NMEN 177_121885_3136921, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 31 33 97.0 31 .C............................... CATCACGTTATAGCCGTAGCTGTTGCCGATG 95 33 93.9 31 GT............................... GATTTAAGACCGCCCCAGTCAGGATCGCCAT 159 33 93.9 32 CT............................... ATTAGTTACCCCTTTAAACAGTAGGCGCGTGC 224 33 97.0 31 .A............................... GTCGGTCGAGGCCATTTGTGTCTCGATGGCG 288 33 100.0 32 ................................. GCCGACTTTTTCAGTTTTCGGACGCAGGTTGA 353 33 93.9 31 TT............................... AAGACCAAATCGAGGCTGCCAAAACCAAATC 417 33 100.0 31 ................................. CTTTTCTCGTTGGTTTTTTAGCCACGCTTTC 481 33 93.9 31 TT............................... CCACCGGCGACCGCTACACCCTGCGCGAGCC 545 33 93.9 31 GC............................... AATAATGTGAACACTTACTAGAAACAAAAGG 609 33 97.0 32 .T............................... CATAGTCCAAACGTTTGAGTTAATTAGAAACG 674 33 93.9 33 GT............................... GGCTTTGAATTTGTCAAACTCGGCGCGCAGGGC 740 33 93.9 33 GT............................... AGTTTAAGCAGTATCAGATTGATATGGCGCAGA 806 33 97.0 31 T................................ AATACGGAAAATTTCGACTCATGGTTATGGG 870 33 100.0 33 ................................. GCTTGAGTACAGGTCATTATTTAACTCCCGTGC 936 33 93.9 33 TA............................... AGGTCTACAAGGGCTTCGGTAATCAGTACCACC 1002 33 100.0 34 ................................. TCTTTAGGGGTTACGCTTTGGTAGAAGAGATGAG 1069 33 100.0 31 ................................. ATATGCGCGCGCAAGCCAGCCCTGCCATAAG 1133 33 97.0 32 T................................ AATCGCGCCGACGTTGAAGCGTTGGTGAATCA 1198 33 93.9 33 TA............................... TTCCTTTATGGGCTATAAGTTGCTCACTGGCTT 1264 33 100.0 34 ................................. TTTAGCCAAGTATTGAGTAACGTCAGTAATATAC 1331 33 93.9 31 CC............................... TTTCGATAACCTCAGCACGAATACCGCCTTC 1395 33 97.0 34 .A............................... GAGACTACGGCGAATATCCAAGTAGCCGAGAACG 1462 33 93.9 32 TC............................... GGCATGGTTGAGTATGAAGACAGTGTTACTGG 1527 33 93.9 33 TA............................... CAATCGCCACGCAACATCATGACATTGCCCACG 1593 33 93.9 37 TC............................... GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 1663 33 93.9 33 TC............................... CAGCAAAACCCTCTACTCGCTGCCTTTACCGGC 1729 33 93.9 0 CC............................... | ========== ====== ====== ====== ================================= ===================================== ================== 27 33 95.9 32 AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : ACATCTTGATACCACTGCCCAAGTTGAGAAA # Right flank : CTCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //