Array 1 38275-37977 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSEO01000008.1 Aggregatibacter actinomycetemcomitans strain PN_688 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 38274 33 97.0 32 ................................C CTGCGATAAACATAGTTTGTTCATGGTCGGCT 38209 33 100.0 34 ................................. ATAAATATTATGAATCACCGCTATAAAGACCCGA 38142 33 100.0 34 ................................. ACCGGGAGTTTGTGTAACAACTACAACAGCTTAG 38075 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 38009 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= ================================== ================== 5 33 95.8 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : GGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTCA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 135504-141659 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSEO01000003.1 Aggregatibacter actinomycetemcomitans strain PN_688 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 135504 28 100.0 32 ............................ TAAACAAGATTTCATTGTTAATGATTATAAAG 135564 28 100.0 32 ............................ GAATTGGAATAAGCGTTCAGCATTGGCAAAAG 135624 28 100.0 32 ............................ AACAGATTCAGTACCTATTTCTCGATTCCGGT 135684 28 100.0 32 ............................ TTTATATGCGGGTGAAAAAATGATTTCCATTA 135744 28 100.0 32 ............................ AAATTACAGCAAGTTCATTTTTATGCACTTTT 135804 28 100.0 32 ............................ TTCTCCCCACGCTTGTTTATCGTCAAAAAATA 135864 28 100.0 32 ............................ GGCGGCTATTGTGGGCATACATTATCGCAAAT 135924 28 100.0 32 ............................ CGTGAAAATTTGATATTTTTGAAAGCTCTCTA 135984 28 100.0 32 ............................ AGTCGCAGTTTGTTTTTCGATCAATTAACAAT 136044 28 100.0 32 ............................ TTATAATGATTACCTTATTAAATGCTGTTTGC 136104 28 100.0 32 ............................ TCAGCGCTTCAATTTAACGATTTTTATCCCAT 136164 28 100.0 33 ............................ CTGCACAAATATTGAAACAAATAACACAAATTT 136225 28 100.0 32 ............................ TTGCTTGTGATATATCTTCCGGTATCTAAGCC 136285 28 100.0 32 ............................ AAATCGATAATGTAAATAATCGCATTGACAAC 136345 28 100.0 32 ............................ ATTACGTCTGGTAACAATCGTGTTATAAGACG 136405 28 100.0 33 ............................ CTGAAAAATTGTATATTTTCTAACCAAAAATTT 136466 28 100.0 32 ............................ TCTTAAAATAGCCATAGGTGCAAGTTTGAGCC 136526 28 100.0 32 ............................ TTATATATATCGTGTAAAAAATGAACAAAATA 136586 28 100.0 32 ............................ TTTTAGATTGAAATAGTGTTGCAATATTACTT 136646 28 100.0 32 ............................ AGTATACAACCCGTTTTGATCTAATTCCCTTG 136706 28 100.0 32 ............................ TTGTATATTTTACAATTGAAGCAATCTCGTTT 136766 28 100.0 32 ............................ TTACGATAATTTCGTATAAGAAGGAGCGCTAT 136826 28 100.0 32 ............................ AAATTCGCCCTGTATGGTTAAAAAACATTGAC 136886 28 100.0 32 ............................ AAACATCATGTGAATGAACTACCTGTCGTTTG 136946 28 100.0 32 ............................ CTACCTCTTCACTTGAAAATCAATAAATAGCC 137006 28 100.0 32 ............................ TTCCTGAAGGTGAAAATTCAGCGTAGGTATCA 137066 28 100.0 32 ............................ TTATTGCAAACTGTACGCACCTGAAATGATGA 137126 28 100.0 32 ............................ TGCTATAGAATATGATGTAGCAAGTAGTGTAA 137186 28 100.0 32 ............................ GTGTTGATTTTCAAATAAAGGTTTCTAATAAA 137246 28 100.0 32 ............................ AATAACACGAACATTTGGATTTATTTTTAATA 137306 28 100.0 32 ............................ ATTGCTAAAAGACGGGACATAAAACAAAATAT 137366 28 100.0 32 ............................ TAAACAAGATTTCATTGTCAATGATTATAAAG 137426 28 100.0 32 ............................ TCCTGATATGGGTTTCGTTATTAACACAATTT 137486 28 100.0 32 ............................ AACAATAGAATTGATGTAAAAGATAAAACATC 137546 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGGCAGAAATTTTAA 137606 28 100.0 32 ............................ TATATTTGTATCTCGCTCCTTTCCTGTTTCTT 137666 28 100.0 32 ............................ ATAAACAAAAGATTCAAGAAAATCCAACAAAA 137726 28 100.0 32 ............................ TGTCAAAATACCATTGCTAAAACACGGGACGT 137786 28 100.0 32 ............................ TCATCTTATGGTAATAAAGACGTGGGTCAAAT 137846 28 100.0 32 ............................ TGTAGATTGCCCACGCAATTCCATACTGCGAT 137906 28 100.0 32 ............................ ATCGCTTTATTTCTATGTATGCTAGGACTTTT 137966 28 100.0 32 ............................ TAACAGAAATAAGAAAAAAGCTGAAAGAATTA 138026 28 100.0 32 ............................ TGCTAAAAATATAAAATTATTTGAATTATCTA 138086 28 100.0 32 ............................ TAGTCTTTTAGTATTACCAGCAAAATCAAGCA 138146 28 100.0 32 ............................ TATCTTTTCGAGTATATATGCTGTGGGCAAAC 138206 28 100.0 32 ............................ AGCAAAATCAAGCACTAAGCAGTTTTCTTTAT 138266 28 100.0 33 ............................ AAACCTCTGGATTATAGGAATAAAATACTTCGT 138327 28 100.0 32 ............................ TTTTGATAGTGAAAAATTATTAATATTAGATA 138387 28 100.0 32 ............................ TGGTACTGTCTATGAAGCGTTAGCAAAAGTTC 138447 28 100.0 32 ............................ TATTTGTGCGTCTGATAATGAGCGCAAATCCA 138507 28 100.0 32 ............................ ATAAAATAAATTGCTGTAACCATAAATTTATT 138567 28 100.0 34 ............................ CCAATGCCGCTAACATGGCTTGACGATCAGATAT 138629 28 100.0 32 ............................ TTGAGCTTGTGTAGTTTTATCGTCATGGTTGA 138689 28 100.0 32 ............................ TGAAGCAAAACAATTTGATACATTTGCGATTG 138749 28 100.0 32 ............................ TGTTCCCGAAACATTGTAGGCACGACCACATA 138809 28 100.0 32 ............................ TTTTAATGGAGCAATCAAACTATATGATTTAT 138869 28 100.0 32 ............................ TAATCGCTTTTCAATGTAATGTATGGTTACAC 138929 28 100.0 32 ............................ TTATGAAGAAGCAATGATGGCTTTAATTATTT 138989 28 100.0 32 ............................ TATGCCAATTTTATATTCAGTACTACCAATTA 139049 28 100.0 32 ............................ AAAATGATAACATTCTCAAGTTTTCTGCTCAT 139109 28 100.0 32 ............................ TGTTAGACCTAGCAACACGAAATAATTATTGA 139169 28 100.0 32 ............................ TTAAAGACGAAAACATTCCGGTATGGAATTGT 139229 28 100.0 32 ............................ TCTTTCTTAGGTTTCAGAAGTTGATAAGGAAC 139289 28 100.0 32 ............................ ACAATTAAAACTCCAATTTTGTGCCCTTTTAC 139349 28 100.0 32 ............................ AAAATGATAACATTCTCAAGTTTTCTGCTCAT 139409 28 100.0 32 ............................ AACGATATTACTGTCAATTTTTTTTGTTTCAC 139469 28 100.0 32 ............................ TTGCCCTACTTGTGGAACAAAATTCTGTTGAA 139529 28 100.0 32 ............................ ATTCTTTGTTCTATGCTCATTGTAAATCACAT 139589 28 100.0 32 ............................ ATATAATTGTTCAGCATTATTTAAAGTACCGA 139649 28 100.0 32 ............................ TTTAGTAAAGGCGGTGCGCTTTATTCTGAACA 139709 28 100.0 32 ............................ TTTGCTAAGGTGCTTTTTCTTTTTCAGTTTCC 139769 28 100.0 32 ............................ ATGTGCGCCCCGCTGGTTCATCCCGATACTGC 139829 28 100.0 32 ............................ TTCAAAATTGGTTAGTCAACAAGGTGTAAAAG 139889 28 100.0 33 ............................ CAGAAATTGTAAATTGAATTTTTAAGAGTGAAC 139950 28 100.0 32 ............................ TGTGGATAACTATTCAACATTTTCGATCTAAA 140010 28 100.0 32 ............................ ACTAAAAGCTTAAAATAAATTAAGCTACCACC 140070 28 100.0 32 ............................ AAGAACATTAAAGAAGTGTCTGCTCCTGCTTT 140130 28 100.0 32 ............................ TACAATTAAAACTCCAATTTTGTGCCCTTTTA 140190 28 100.0 32 ............................ TGAATATTTAATAAAACAATTATTAATCTTAT 140250 28 100.0 32 ............................ TAACAAATCCTTTCGGCGTTTGATGAGTAAGT 140310 28 100.0 32 ............................ ATCGTCTAAAGAACTGTTAATATTGTTATCAC 140370 28 100.0 32 ............................ TGTTAGACCTAACAACACGAAATAATTATTGA 140430 28 100.0 32 ............................ TACGGCTAATCCATTCCCGACAGCACAACCGG 140490 28 100.0 32 ............................ AAGATGATAACATTTTGAACTTTTCTGTTCAT 140550 28 100.0 32 ............................ ACGGGCAAAAATATATCACCAGGGGGAGGGGT 140610 28 100.0 32 ............................ ATTCAAAATTCGCTTTGCTTGTGATATATCTT 140670 28 100.0 32 ............................ TAAATATTTCCCGCTATAATAGCGGGATTTTT 140730 28 100.0 32 ............................ TTTTCCAGATGGTGAAAATTCAGCATAAGTAT 140790 28 100.0 32 ............................ TAGCATACCATAATACAAAAACTAATCATGGA 140850 28 100.0 32 ............................ TAACATTTCATACAGATTCAAGAAACGTTGTT 140910 28 100.0 32 ............................ TTTATATTAAAGCTGATTATCTTCTAAGAATT 140970 28 100.0 32 ............................ TCTGAAATAGCTAATATTTCCACCAATAAAAG 141030 28 100.0 32 ............................ AAAAGCGATCGCATGCTCCGCAACTGCAAAAA 141090 28 100.0 32 ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 141150 28 100.0 33 ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 141211 28 100.0 32 ............................ ATTGATCAACAATATTTTTCAATGTTTGATAT 141271 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 141331 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 141392 28 100.0 32 ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 141452 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 141512 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 141572 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 141632 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 103 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //