Array 1 942935-944091 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063198.2 Streptococcus agalactiae CJB111 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 942935 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 943001 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 943067 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 943133 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 943199 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 943265 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 943331 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 943397 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 943463 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 943529 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 943595 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 943661 36 100.0 29 .................................... CCAAAACAAATACGAATGCTTGAGCGATA 943726 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 943792 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 943858 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 943924 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 943990 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 944056 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //