Array 1 64260-63742 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYF01000006.1 Salmonella enterica subsp. enterica serovar Anatum strain M-5351 NODE_6_length_338748_cov_75.283402, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64259 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 64198 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 64137 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 64076 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 64015 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 63954 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 63893 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 63832 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 63771 29 93.1 0 ............TC............... | A [63744] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82127-80574 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYF01000006.1 Salmonella enterica subsp. enterica serovar Anatum strain M-5351 NODE_6_length_338748_cov_75.283402, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82126 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 82065 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 82004 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 81943 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 81882 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 81821 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 81760 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 81699 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 81638 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 81577 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 81516 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 81455 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 81394 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 81333 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 81272 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 81211 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 81150 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 81089 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 81028 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 80967 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 80906 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 80845 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 80784 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 80723 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 80662 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 80601 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //