Array 1 968-779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPK01000037.1 Neisseria meningitidis strain NmNX08 Scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================================== ============================== ================== 967 43 100.0 30 ........................................... CAGGCGGGAATCCAGACCGTTCGGTTTCGG 894 43 100.0 30 ........................................... AAAACAGAAAATCAAAAACAGAAACCTCAA 821 43 100.0 0 ........................................... | ========== ====== ====== ====== =========================================== ============================== ================== 3 43 100.0 30 TTTTTTTGAGGTTTCGGGTAACTTCTAAACCGTCATTCCCGCG # Left flank : GAAGGATTGCTCAATACCGACAACAACAATCCCGACTACCGTTTTTACGTCAGCGATATTCCTTTGAAATTCAGAACCATCGGCGAGCGTTTTCTGGGCAGGACGATGGAGCAGATTGAAATGGTGTCTTTGGGTTAAAACGATGACGGAAAGCTGCCCGAGATTACAGAAACCTAAAATCCCGTCATTCCCACGAAAGTGGGAATCTAGACCTGTCGGTGCGGAAACTTATCGGATAAAACGGTTTCTTTAGATTTTACGTTCTAGATTCCCGCTTTCGCGGGAATGACGGGATGCAGGTTTCTGTGCAGATGTATTCGGATTCCCTCCTGAGCGGGAATGATGGGATTTTTAAATGTCCGAATGCCGCAAATGCCGTCTGAAAGGCTTCAGACGGCATTTTTTACACAATTTTCACCGTTTTCCATCCTTCTCGATACACTGTAATCTCGAAACCCGTCATTCCCGCGCAGGCGGGAATCCAGACCGTTCGGTTTCGG # Right flank : AAAACAGAAAATCAAAAACAGAAACCTCAAATCCCGTCATTCCCGCGCAGGCGGGAATCTAGACATTCAATGCTAAGGCAATTTATCGGGAATGACTGAAACTCAAAAAACTGGATTCCCACTTTTGTGGGAATGACGGGATATAGGTTTCCATGCGGACGCGTTCGGATTCACGACTGCGCGGAAATGACGGGATTTTGGTGTATTCCCTAAAAAAATAAAAAAACATTTGCAACTTTGTTAAAAATAAAGGNNNNNNNNNNTTAAAAAACACAAGGTCGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCACCAAGCCATTTAGGGGATTTTCCATGAGCACCTTCTTCCGGCAAACCGCACAAGCCATGATTGCCAAACACATCGACCGTTTCCCGCTATTGAAGTTGGACCAGGTGATTGATTGGCAGCCGATCGAACAATACCTGAACCGTCAAAAAAACCGTTACCTTAGAGACCACCGCGGCCGTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTTTGAGGTTTCGGGTAACTTCTAAACCGTCATTCCCGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.81%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 437-1000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPK01000018.1 Neisseria meningitidis strain NmNX08 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 437 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 503 36 97.2 30 ............A....................... CGACAACAAAGCCGTCTATGACCTGACCGA 569 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 635 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 701 36 100.0 30 .................................... GCCACGCACCTACACGGGGTGGTTTGTTAA 767 36 100.0 30 .................................... TCGCACACGCAATGGAGCTTATCGTTTACT 833 36 97.2 30 ..................C................. TTCATTCCGATTGCCTTGCGTTCAAGGTGT 899 36 97.2 30 ..................C................. TGCAATCTGATTTTCCGCCGTCTATACATC 965 36 97.2 0 ..................C................. | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.1 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGTAGCTCCCTTTCTCCTTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //