Array 1 31873-30209 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIP01000034.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE115 HEIDELBERG_S9_trimmed_contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31872 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 31811 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 31750 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 31689 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 31622 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 31561 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 31500 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 31439 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 31378 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31317 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31256 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31195 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31134 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31073 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31012 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 30951 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30890 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30829 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30768 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30665 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30604 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30543 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30482 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30421 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30360 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30299 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30238 29 96.6 0 A............................ | A [30211] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5344-6469 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIP01000119.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE115 HEIDELBERG_S9_trimmed_contig_130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5344 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5405 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5466 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5527 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5588 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5649 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5710 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5771 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5832 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5893 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5954 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6015 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6076 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6137 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6198 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6259 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6320 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6381 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6442 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //