Array 1 950683-952114 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028314.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 950683 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 950744 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 950805 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 950866 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 950927 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 950988 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 951049 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 951110 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 951171 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 951232 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 951293 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 951354 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 951415 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 951476 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 951537 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 951599 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 951660 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 951721 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 951782 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 951843 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 951904 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 951965 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 952026 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 952087 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 968247-969784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028314.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 968247 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 968308 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 968369 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 968430 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 968491 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 968553 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 968614 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 968675 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 968736 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 968797 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 968858 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 968919 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 968980 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 969041 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 969102 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 969163 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 969225 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 969328 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 969389 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 969450 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 969511 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 969572 29 96.6 32 ........A.................... TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 969633 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 969694 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 969755 29 96.6 0 A............................ | A [969781] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //