Array 1 388239-386219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJZ010000001.1 Ligilactobacillus agilis strain An795 An795_NODE_1_length_514379_cov_67.0607_ID_8770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 388238 30 100.0 37 .............................. TAACGAAGATGAATTAAAGAGCTTCTTGTCATTGCAC 388171 30 100.0 35 .............................. ACTTGTGTGTGGATTCCGTCAGTGTCAACCTTCAA 388106 30 100.0 36 .............................. CTAGGCTTGTCGGTAGGGTTCCCATTAGCCTTCTTC 388040 30 100.0 34 .............................. AATTGTTTGAGCGACAGCTACAATTGCATTCCAA 387976 30 100.0 36 .............................. CAGAATGAAACTGGTATCTTGGAGTATGGCTTTTTT 387910 30 100.0 36 .............................. TGTTATGTGCATCAGCTAAAGCCTTATATTGCTTCT 387844 30 100.0 37 .............................. AACGAAATTTACAAAAGAAGAGATTGAAGAACTTAAG 387777 30 100.0 35 .............................. AGCAAACAGAATATCGAAGGGTTTAAGAAGCTAGG 387712 30 100.0 36 .............................. AACCAAGCCAGCAACTAGTCCGGCGATTGCTGCTGC 387646 30 100.0 37 .............................. ACCCCCTCTAAATTTAGGCTTCTAATTGGAAATTCAA 387579 30 100.0 37 .............................. GGCTAAAGATTAAAGCGTAAAGCTTGTCGACAAGCTC 387512 30 100.0 36 .............................. CTCATGGATAATTCCATGTAAGTGTTATTGGTCATC 387446 30 100.0 37 .............................. CTCAAACTCATCACCGTCGTATGTGTCTGCTATAATT 387379 30 100.0 39 .............................. GAGGCATATCTAGGGTTATTTGCTCGCTTGTCATCTCAG 387310 30 100.0 37 .............................. GTTGCAGTTCTAACTCCTCTTTTCCTCTGACTTTCTG 387243 30 100.0 36 .............................. ACGCGCACGGTCTTTTTTTATGACAAAAGGACGTTC 387177 30 100.0 36 .............................. GATAACAACAAACGGATACGGGGCATTTTCTGTCTC 387111 30 100.0 37 .............................. CGTGTTATCAGCAAACAAGGCTTCATCAAACGGGATG 387044 30 100.0 37 .............................. AACTGGAATACAGTGATTGGCTCTAATGGGACTGCGA 386977 30 100.0 37 .............................. AGCTATGTACGGTGATGATGACGCTATTGGCTTTCAT 386910 30 100.0 35 .............................. AAAAGAAAAGCTTGAGTCTAGAATAGCGTCATATT 386845 30 100.0 39 .............................. TCCAGCTTGCGGGAATCTCTTTACACGTGCCATATTTGG 386776 30 100.0 36 .............................. GCAGTTAGTTGCGAATGCAAAACAGATGGCAATTGT 386710 30 100.0 37 .............................. CCGTTTCAACCTTGCTTGCTATAAGTGTTTCTAAAAT 386643 30 100.0 34 .............................. CCGAAAGAGCGTGCATTGTCTATCATCTTATCTA 386579 30 100.0 36 .............................. GTAAATATTGACGGTCGGGAGGTTGCAAGAGTAACC 386513 30 100.0 36 .............................. TATAATCACCTCTTTTTATCTAAAAGTCTTGATTAG 386447 30 100.0 37 .............................. CAATCACTTCTTGGCGGTCGCTTGCTTCCAGCACCTC 386380 30 100.0 35 .............................. GTGCATTTTTCCTTGCTCTGCAATTAAATCAATAT 386315 30 100.0 37 .............................. ATATCCTCTTAAAACTGACTTTGGCGACCAGACTTTG 386248 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 31 30 100.0 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TACCAACCTTTTAAACTATGGTGGTGATTTTAAGTGTATATAATTTTAGTCTATGATATTGCATTAGATCAAAATGGTGCTAAAGTTTTAAGGCATGTTTTTAAAATTTGTAAAAAATACCTTAGTCATGTTCAAAAATCTGTGTTTGAAGGGGAGCTTACTAAATCACAGTTAAAGAAATTAACGATTGAATTAAGGAAATGGATTAGAGATGATAAAGACTCTGTAATTATTTTTAAAAATCGTAATAAGAAATGGCTAGATAAACAGTTTTTAGGAATGGATATGTCTGATGAAACTTCAAACTTTTTCTAATTATTTATCTGTCGACCATAGATAAAGCAAATTAGGGGTAACATCGACAGATGATTAAAAGCCCGAAATATCAAGGGTTGAAAGAAAATGAAGGAGAAGGTAATATATGACTGTAGGTGTAAATAAGGTGATAGACAGAATATATGGATTAAGTTATTGATAATACAAGGCTTTTAAGGTGTAGT # Right flank : GATGCAAGCTGACGGTGAAAAGTATTCGCTTCGGTACGGGAAGTCACAAAAAGAAATTGCCGATGCTTACTTGGAACTAGTTAAGCGTGATTACTCTGGCAAACAAGCCCTTGGAGCAATGAATACAGAGCTACAAGGTTCGATTGCGTCAGGTGATGACTTTAAAGATGTAGTTGAAGTAGCCTTCCAAACTCTGGAAGGCTTTGGGATGACTGTTGATAAGAACGGTAAGCAGTTATCATCAACTAAAGAAATGACCGTTCAGACTAAAAAAGCAGTTAATACCCTAGCATACTCGGCTGATGTAACATCAACTTCGTTTCAGTCCTTAGGGGTTGGGATGTCCTATGTATCATCAACAGCCCACCAGGCAAAGTTCAGTCTAGCAGAAACGGCGAGTGCAATGGGTGTGCTATCGAATGCAGGTTTAGAAGCAGACAAGGCTTTGGTAAAACTGGCCGCTTAGCGAGTAATCGCTTTGAACAAGCATTTTGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 491830-491408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJZ010000001.1 Ligilactobacillus agilis strain An795 An795_NODE_1_length_514379_cov_67.0607_ID_8770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 491829 30 100.0 35 .............................. AAAAAGAAGAAAATCTTTAAAGGTCAAAAGGGCTT 491764 30 100.0 36 .............................. CAATGCAATTGTACTGGCTTAATTTTTTGACGACTG 491698 30 100.0 35 .............................. TGTAGACTTCTGAATTATCAGCTAACCAAGGTAAG 491633 30 100.0 35 .............................. GAAAGAGGGGGGACGCTAACGCTCCCCCCTGTAAC 491568 30 100.0 36 .............................. TGCTAAGCCCTTTATGCTTGCTTCTTTTACGATATG 491502 30 100.0 35 .............................. CGGGGAGCAATTTTTGAAGCAGACGGCGGTGCTTG 491437 30 93.3 0 ............................TG | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.0 36 GATTCTATTTAACTTAAGAGGAATGTAAAT # Left flank : GGTAACACCGGCGCGCAGGTTCAAATCCTGTACTCTCCTTAGATAAGGTTTTATAATGTTTTGGGGCGTTATAATCGTTGATATATCATGCTTTATATTTTATAAATGTTTGGTAATGTAATGCTTTTTTAGGAAAAAGTATCCTAAAAATTATAATAACTTTCCCTGGTGAGTACCGTATATTTTATATACGGTATTTTTTATACCCTCTTTTTGTTTTTCGTTAGTCTAAAAAATATGCATGAAGTATGCGTTAAAGGTCTGCAAGGGAGAGTCTATAGTGATGGGTTTAACTCGGAATGCTAACTAATCTTCAAGTATACATCTGTCGACCGTAGATAAAGCAAAATGAAGGGGACATCGACAGATAGTGAGAAAGTTGAAATTGCTGAACTTGAAAGAGTTTACAGAAAAAAGTATCATGTAGATATGGGGATAAATGTAGTGATAGACAGAATGTGTGTAAACCAGTTGGTAGTACAGAGTTTTTAAAGGGTAGT # Right flank : ATTGAAGAAGTTGAGCATTATTATGAAGAATTTAAAAATAATCATATGACACGCGAAGAAGCTAGAAAAGTTTATGCTGAAGGACGCAAGATTAATTAATGTCCAGTTATGCAAAGATAGTGTTATTTGGGCGAAGTGTATTATCATTTTGAACTCAGTCTCAGGACTGCTGCCGTAGTTTTTCTAGTGTTGTAATCGAAGTAACAGAATAACAATTATCAAGATAGAATAGGAATATAGTAACATGATGTTTCTACAAGAGTTAGTCAGTTAAATTAGCACTATGATTATAAGCTTAAAAGGAGTATTGGAATTTGATATGTTAGAAGTATCCTTATTTAAACAGAGTTATTTTTATGAAAAGTATAAAAATAGTTATGTTGCCGACAATTATTAAGGGATTATTTTAATGACAGTACGATAGGTCGAGTTACTTCCGTACGATTAAAGACCTACACGGATGTTGTCGCCTGGGACATTACTATCATGAGTGACTTACT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 501797-500439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJZ010000001.1 Ligilactobacillus agilis strain An795 An795_NODE_1_length_514379_cov_67.0607_ID_8770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 501796 29 100.0 36 ............................. CAGCTATAACTTAGATAATGCTATTAAGCAATCTTG 501731 29 100.0 39 ............................. CAGTCCTTGCTCTATTATTTTTAGACATAAAAAAAACCG 501663 29 100.0 40 ............................. CAATAGTTGGTTTACTCCGTTTCTTGTGATTCCTGCTCCG 501594 29 100.0 41 ............................. CGAACTTGTTCCACCGGAGCTCACACCAGCCGACAGGAAAA 501524 29 100.0 39 ............................. CGACGCCGACCAACAAAAGCTAAAGAACGCTCAAACTCG 501456 29 100.0 39 ............................. CCTGGAAAGAAGTATATAAACTCTATCAAGAAACGTTTC 501388 29 100.0 36 ............................. CCTCTAACCCATTCCCAAAAATCAAACTCATGCTTT 501323 29 100.0 37 ............................. TTAGTTGATTTAAATCTAGGAATCCCAAAATGCTTAG 501257 29 100.0 37 ............................. TTTGGCAAAGAAACATTTATGCAATTCATGAAGGAAC 501191 29 100.0 37 ............................. TAAACATTGAAATGCTAAGGGGCTCTAATTCGATTGC 501125 29 100.0 36 ............................. TGAGCATGCTTTGGACTTAGATAATCTTAGAACACT 501060 29 100.0 36 ............................. TGTGTTTTTCAGTGCCTTTTCAAAATTACATATTAA 500995 29 100.0 37 ............................. TCAAGATGATAATGGTCACAATTCCGTGAGCAACTAG 500929 29 100.0 36 ............................. TCCGCTTTTCCGCTTCCTACCTTTTCTTCCAGTAAG 500864 29 100.0 36 ............................. TTAGCCCCACCTTCTTTCATTTCTTGTTGCCTCACC 500799 29 100.0 37 ............................. TTTATTCGCAGTGGTCAGTGTTTTGGCGAGCACTCAA 500733 29 100.0 37 ............................. TCCCGCTGAAATTAATGTTTTGACCGAAAAATAAAAA 500667 29 96.6 37 ............T................ TCTCGTCCTCCACCTTCCAACAACCGAACTTCTTAGG 500601 29 100.0 40 ............................. TAACACGATAAGCACTTCAACTAGTTGTCACCTTAGACGA 500532 29 100.0 36 ............................. CAGGCGCTTATATGATGTCTGAGAGCTAATATATCA 500467 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ========================================= ================== 21 29 99.7 38 GAATCTATTTAACTTAAGAGGAATGTAAA # Left flank : TTAGGCATGACGAAACTAAGGCGTCTAAGTAACTTGATTTTACGTTTGATTCCTTCAATAGGGCTATTTGAGTATTTAGCAAATTTAGGATTAGCTATATTCAAAACGTGGACCAGGTTTTTATCTGTTGTTAAGTAGGGTATTTGAGGTTTGAATTAAGTGATTATTATCGATGTTTTTAATGTTTTTAGGGTAAGCCTCATCACGTTTCTTGGTTCACTGGACTTTTTCATAAGAAATTCTAGCTACGAAATTGTTTGTACCTAGAATGTTGTGGTGAAGCGCGTTTTTTACTAGTGATATTTGGTTATAGAGTGCTAGTATCTGTCGACCTAAGATAAGGTGAAATAGTACTAGTATCGACAGATGACAAAAAGGTTGATATTATAGGCCTTGAAAGAATTTAGGGAAAAAAGTAATATATAATTGAGAGGGAGATTGGGTGATAGACAGATATATGTGAAAACTAGTTGATAGTACAGGGGTTTGGGAGTGCAGTG # Right flank : CTAATTATGAAATGTCTCAGTCGTTTAGCAGAATTTTTAATGGTACTGGGGTAACTGAAGATGATATAATTATGTTGAAACATGAGCTATACGAGCGGAAGCTTATGAAATCTAACCCTAAAATGACGTATTATGAGGCTCGCCAATTATCAAAAGAAAAGTACGACTATAAAGGCGGTGGTAGCTAATGATGTTTGAAATGATTTTGCTTGATAATAACGATAAATCTGTAACATATGAAGTTAGGAATCATGATCGAGATATAAAAATAGATAACATCACAGTTAGTAAACAGGATAAAAGCTATGTACTCGAATCGGGGAAGAAAATTGATAATCAATTTGTTAGCTCCACTTACAGAGTGATTTTAAGCTGTTTGAAAGACGGAAAATATCCTAAGTCATATGCAAACGGTTGGGGATAGGTAAAATGAATTGTTAGAAGAGCAAGAATCTATTTAACTTAATAGGAATGTAAATTTAGCTAATAGTGACTTGAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 505418-504319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJZ010000001.1 Ligilactobacillus agilis strain An795 An795_NODE_1_length_514379_cov_67.0607_ID_8770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 505417 30 100.0 37 .............................. ACGCTTTATGGCAATTACAACTAACTGCTATTAATGA 505350 30 100.0 37 .............................. TCCTTGAGTACGATATGGACGGAATCCGTATCGGAAT 505283 30 100.0 36 .............................. TACTTAACTTCAAGTTTCTTTTCTGCCTCTTTTAAC 505217 30 100.0 37 .............................. TTTAACTTTTTAAAAAAGTTAAAATCAAAAAAATAGC 505150 30 100.0 36 .............................. TTAGCAAGTGGGGCAAGTGCCAAAAACGGTGAAGAA 505084 30 100.0 40 .............................. GACGTGCGCCTAAACAGATTAGAAGCGCCAATTAAGTCAG 505014 30 100.0 38 .............................. CCATATCTAAACCTTTATGCTTGCTCTTTTTGCGATAC 504946 30 100.0 35 .............................. GCCAAACTTACTTCTGCTGACGCTATATCAATACT 504881 30 100.0 37 .............................. CCAGTATAATCTTCAAACGCTTGTCTTTGCTTGTCAG 504814 30 100.0 37 .............................. GTATTGGCAACCGATTAACCTCTGGCCGATTCCGTTT 504747 30 100.0 38 .............................. TCAATTGGTAAATGTTTTCTAACTCGTTGGTCTAACAA 504679 30 100.0 37 .............................. GTTCGTGACGTACTTCTACAACAAACGCTCCGTTAAC 504612 30 100.0 36 .............................. GCAGAAATGGGCAAAATTTTGGCAAACGATCTACTT 504546 30 100.0 36 .............................. TTTATTTCGCCTAATTCTAAACGTTTAGCGTCTTGG 504480 30 100.0 36 .............................. CGACGGGGAAAGTTAGCTATAATTTAAATGCAGCAA 504414 30 100.0 36 .............................. GTTTGGGTTACTCCGCTAAATTGCACATCGTCTCTC 504348 30 93.3 0 .....................T......C. | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 99.6 37 GAATTTATTTAACTTAAGAGGAATGTAAAT # Left flank : TCATATTGGTGAAATTAGACATGCTGAAACTAAGGCGTCTGAGTAGCTTGATTTTACGGTCGATTCCTTCAATAGGGCCATTTGAGTATTTAGCAAATTTAGGATTAGCGGCATTCAAAACATAGGCTAGTTTTTTATCCGTTGTTAAGTAGGGTATTTAAGGTTTGAATTAAGTGATTATTATCGATGTTTTTAACGTTTTTAGGGTAAGCATCATCACGTTTCTTGGTTCACTGGACTTTTTCTCATAAGAAAATTTAGCTGCAAAATTGTTGTGGTGAAGTGCATTTTTACTAGTGATATTTTGTTATAGAGCGCTAGTATCTGTCGACCTAAGATAAGGTGAAACAGCACTAGTATCGACAGATAACAAAAAGGTTGATATTAAGGGACTTGAAAGAATTTATGGAAAAAAGTAATATGTAATTGAGAGTGAAATTTAGTGATAGACAGAATGTATGTGAAAACTAGTTGGTAGTACGGGGGGTTGGGAGTGCAGT # Right flank : TATTCAACTCAACGAATTACTAGAATAGAAGTAGCATGAGTTCAAACTAAGATTACAATACAATGACATAGTTTGAAACGTAATGACTATGATTTCTGCAAGTAGTATAAAGAACTAAGTGATTGTCATGATTGTGCCTTAAATAGGTAATTAAGACAATAGCTGGGGTAAGGGGGGATAAGGTTAAAGATGTTCCTATGATTCCTGTTCATCCTAATTATGGATGTTAGTTATATCGTTAAGTATCTAGATACAACACTAGTCAAGTATCAGCCTAACTAAAAAATTCCAGAAAAAACCAAAACCTGCTCTAATTCTGTACAGGCAAGATATGTTGAAGGCAAAGTGGTACAGTACCGTTTATGTAATAACGGAGGATACGTACTTGTTGACTTCGATTTAACCAATTATGGTAATCAAAAACATCATAAAGTAGTTTCCCATAAGTATGAATGAACTATATAAAAGCAAAAATGGTATGAATACAAAAAGAAGTAAAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 5 508130-507364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJZ010000001.1 Ligilactobacillus agilis strain An795 An795_NODE_1_length_514379_cov_67.0607_ID_8770, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 508129 30 100.0 35 .............................. TATAAAACTAATAGTAAAAGAGATAGTTTGTCAGA 508064 30 100.0 36 .............................. TAGAATGCACACGCGAAGAATTTATTGAACGTGCTA 507998 30 100.0 36 .............................. TGAATCCACCGTACCAAAAGTGAGGGTCCCTGCTAG 507932 30 100.0 39 .............................. TTATCGCCGATAGCGGTATTAAATTAGCAGGTTCGACTC 507863 30 100.0 36 .............................. TACCCCGTCTAAGTTGAAGTTCAAACCGCCACCAAG 507797 30 100.0 40 .............................. TTAACTGAGCACATTAGGTGTGCAAAACCAAACGCAGTTT 507727 30 100.0 36 .............................. CCTGTTGCGCCTTTAATTTTTCCGCTTGCTTCTCAA 507661 30 100.0 37 .............................. TATCGTAGCTCGCATTATGAAAGACGACCACCTTTTC 507594 30 100.0 36 .............................. AAGCCCCGTAATGCGCACCTGGTCAAGGCAGCAAGG 507528 30 100.0 37 .............................. AGAATCACGCTTTAGCAATGTCAATTGCTGACGTTGG 507461 30 100.0 38 .............................. ACGATTGCGATTGTTGCCATGAATGAGTACCACTCTAT 507393 30 96.7 0 .........................G.... | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 99.7 37 GAATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTATTTTTGTGAAATTGTGCATACCAAAACTAAGACGTCTGAGTAGCTTTATTTTATGGTTGATTTCTTCAATGGGGATATTTGAGTATTTGGCTAATTTAGGATTAGCGGCATTCAAAACGTGGATTAGGTTTTTATCCGTTGTTAAGTAGGGTATTTAAGGTTTGAATTAAGTAATTATTATCGATGTTCTTAACGTTTTTAGTGTAAGCATCATCATGATTCTTAGTTCACTGGACTTTTTCTTATAAGAAAATTTAGCTGCAAAATTGTTGTGGTGAAGCGCATTTTTACTAGTGACATTTTAGTATAGAGCGCTAGTATCTGTCGATCTAAGATAAGGTGAAATAGTGCTAGTATCGACAGACAATAAAAAGGTTGATATTATAGGCCTTGAAAGAATTTAGGGAAAAAAGTAATATATAGTTGAGAATGAGATTAGATGATAGACAGAATATATGTGAAAACTAGTTGATAGTACAGGATTTTGGGAGTGCAGT # Right flank : TGCTAAGTCTAGTTTGATAGAAATGGTGAGTGCGATGAGTGTTCTATCGAATGCAGATTTAGAAGCAGATGACGTCGTGGTAAAACTGGTCACCTAGCGGGTAGCCACTTTGAATAAGCATTTTGTTAGCTAAACCGTTATGGTGAATTGATTCCAAGTCAAGACTTAGAGAGAATTTTAGGAAGATGTAACGTCTAGAAAGAGTAGCTTAAAAGTATTGGTTTATGCTGAAATTTTCGCGAAAGAAGAATGAGTTGAAAATAATCTAATAATGTTAGGTATAGACGCATAGCGCTAATGGAGGTGGAGGAGATGAAACTGTATAAATGGAAAAAAGGCGATGGAAAACAGCTATTAGGGTGGTTAGTAGCTGTTTTAGTTGGTGGCGTTATTGCATTGCCGCTCTCGATTTTAGGTGTTACTTCAATTGATGACATAATCATTCCGGCTTTCTTTATTATTGGCTTTATTACCTTCATTGGTGATATATTTAAATGGAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //