Array 1 217562-218200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDLS010000002.1 Escherichia coli strain DFI.2.42 EADOFGCC_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217562 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 217623 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 217684 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 217745 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 217806 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 217867 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 217928 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 217989 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 218050 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 218111 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 218172 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GAGCTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243900-245210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDLS010000002.1 Escherichia coli strain DFI.2.42 EADOFGCC_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 243900 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 243961 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 244022 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 244083 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 244144 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 244205 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 244266 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 244327 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 244388 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 244449 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 244510 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 244571 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 244633 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 244694 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 244755 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 244816 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 244877 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 244938 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 244999 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 245060 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 245121 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 245182 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //