Array 1 1024650-1028319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047616.1 Lactococcus raffinolactis strain Lr_19_5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1024650 36 100.0 30 .................................... TTAAAATCTTTGTCAGTGTCGAAAAATTCC 1024716 36 100.0 30 .................................... GAACCCATTTTATTAGCTACACTAAGATAC 1024782 36 100.0 30 .................................... ATCATAAAAGCAACATCTGTATTATACAGA 1024848 36 100.0 30 .................................... GTCAGCAATAGCATCATCATAGCTATTATA 1024914 36 100.0 30 .................................... TATATGGCGCATTTTCTTCTGCAAGCTGCT 1024980 36 100.0 30 .................................... TATCTGTATCACAATAAACAAACCCATCAT 1025046 36 100.0 30 .................................... TATCATCTAGTATTTCATAAGTTACTCGAG 1025112 36 100.0 30 .................................... ATATTTTCGGTGATGAAGATTATCAATCTA 1025178 36 100.0 30 .................................... TGGAATTTACACGATATTATCATTATTGAT 1025244 36 100.0 30 .................................... AAAAAAACCTTGCAAACACTAGGCTCACAA 1025310 36 100.0 31 .................................... TATCCCATCACCATAAAATAATTGGTCTTTT 1025377 36 100.0 30 .................................... CCCTCAAAAGGAACATATCCTTCTTCCTCA 1025443 36 100.0 30 .................................... CTGCAGTTGAAGCAGACATATAAAATTTAG 1025509 36 100.0 30 .................................... CTATTTTTGAGTCATTTGAAGCTATAATAC 1025575 36 100.0 30 .................................... AATTACTGATTTAGATAATGCTGAAACTGG 1025641 36 100.0 30 .................................... GGACTGAAGATAAAGAAAACTCTTGCATTA 1025707 36 100.0 30 .................................... GTGTCGAACGTTGTGAGCCACAGGCTTGCG 1025773 36 100.0 30 .................................... TTGATATTAACATTATAGATACCTTTCTTT 1025839 36 100.0 31 .................................... AATCCTCGACAACTTAAGCTAGGGTTTATTG 1025906 36 100.0 30 .................................... TTAAATCTTTGATCGCTTTAATTTCTGATG 1025972 36 100.0 30 .................................... GTAAATCGTGTCATGTCACTCGTTTCCTTT 1026038 36 100.0 30 .................................... TTTAACACAAGAACGACTATCAGAACTTAC 1026104 36 100.0 30 .................................... TAGTTTCGTCTAAACTTCCTCTAATAGTAC 1026170 36 100.0 30 .................................... TCGTAATGACCTCGTATGAACTCACTCCTT 1026236 36 100.0 30 .................................... GTTCAATTATTTCAGCTTCGTTTGCGCTTA 1026302 36 100.0 30 .................................... TTGGAAAAGCGTTTTGGAATTCATCCAAAG 1026368 36 100.0 30 .................................... ATATTCAATATTTAATCTTTTAAGTTCCTG 1026434 36 100.0 30 .................................... TTTGTAATATTAAAATATTACACCGTTGTA 1026500 36 100.0 30 .................................... CAAAACGTGACAATGCTAAAGCGAAACGTG 1026566 36 100.0 30 .................................... ATAAATAACAAAACAGATGAATTTATTGAA 1026632 36 100.0 30 .................................... TGAGACTAGTGTGACACCTTGCCACCCACC 1026698 36 100.0 30 .................................... CCTCGCCAAAATTATCATTTTCGTATTCTT 1026764 36 100.0 30 .................................... CGTTCTCCTTAACATAATTCAACCGTCTAC 1026830 36 94.4 30 A..............C.................... ACGATTAAATTTATTATACGCCAAAACCCG 1026896 36 100.0 30 .................................... TCATTATTGATAGTGCAGACTGGGCTGAAC 1026962 36 100.0 30 .................................... AGAACTGACTATCTTTGCTATCGATAGCCA 1027028 36 100.0 30 .................................... ATAGAAATCCGAATCTTGTCATAAATGAAT 1027094 36 100.0 30 .................................... CATTGCTTAATTTATTCTCCCTAGCTGTTA 1027160 36 100.0 30 .................................... CTAATTAAGTATAAATGTAAAGTGTTTTGA 1027226 36 100.0 30 .................................... TATCAAATTCAAAACTATTTATGGTTTGTG 1027292 36 100.0 30 .................................... TTTTTTCAAAAAATTGGAAACCACAACGAT 1027358 36 100.0 30 .................................... TTAGAAAGTTTTGCAATACAGCGAGGAATA 1027424 36 100.0 30 .................................... TTCTTTTTGTTGTGTCATTTATATACAACT 1027490 36 100.0 30 .................................... AATAACAGTAAATTACCCATGATGAGTTGC 1027556 36 100.0 30 .................................... TTATCTTGGGAAAGTAGCATGACTATTAGG 1027622 36 100.0 30 .................................... TGAGCAAAAATATCTAAAGTAGGTGACTGA 1027688 36 100.0 30 .................................... AGTGGATTACCGTCCTTGACAAGCGCCTTA 1027754 36 100.0 30 .................................... CCAATCATTCACAGACCTGATGCCGTTCGT 1027820 36 100.0 30 .................................... TCAAATTCACATTACAAAAATGTACGAATT 1027886 36 100.0 30 .................................... AGCTTCTGATTTTGTCCTGAATCCACTTTT 1027952 36 100.0 30 .................................... AAAAAATTTAGACCGAGGAGTTATCTAGCA 1028018 36 100.0 30 .................................... ATAGGAGGAGACCATGCTTACATTCTCAAA 1028084 36 97.2 30 ..................G................. TTCAAGGGCATTAAAGACAAACGGGTATTA 1028150 36 100.0 30 .................................... AACTCCACGACGACTTCTGTCAACTCAGCA 1028216 36 100.0 30 .................................... TATCGGTTGGCAGAGCAACACGCAGTTTTA 1028282 36 77.8 0 .........................T.A.TAG.CTA | GA [1028303] ========== ====== ====== ====== ==================================== =============================== ================== 56 36 99.5 30 GTTTTAGAGCTGTGTTGAATTGAATGCCTCCAAAAC # Left flank : ATTGGTTATGAACTATTAGATCACGAACTTGATTTAGAGCAAGATGAAATTACTATCCAAGAATTATTTCAGGTGCTAGGTGTTAAAATTGAGACGTCAAGTGATACTATTTTGGAAAAGATATTCGAAATTCTACAGATTTTTAAATATTTATCCAAGAAAAAAATGCTCATTTTTATCAATGTTGCGAGTTATTTGACTTTGGAAGAATTGCAAGCAATTCAAGAATTTTGTGAGTTGCAAAACCTAAAAATTCTTTTCTTGGAACGATATAAAACACCCGGATTTCCTCAGTATATATTGGATTCCGACTATTTTATTTGCACTGAAAATATGGTATAATTAAGGAAATATAAGTGTTTCAACACTTAAAATGTCCTTTGAAAATTTAATAAAATAAATTAAAAATCAACACCATGACATTCATTATTCTGAAGTCCTTCGCTAGGACAAATAGCAAAAATCTGAGACCTCAAAAATGTAGAAAAATTTTCTCCGAG # Right flank : AGATTTGAATAAAAAAAAGACCGCAAATGGTATTTTTTTTGACTCTATGAGTTATGTTGTAATTAGTGCATTGTTTTCGAGGCATTCAATACCACCAAAATTGAAAATAGAAAAATACTATTCATTGTTTTTTACAACTAAAAAGATATTCTATTTCCGTTACTATTTTCTCAAACATCACAATAATTTGCAAGCACCATCACCTATTCTCACATCTACCCCTAAGCAACTGTCTAACAGCTTCACGATCCTCATCAGACAGAGGATACCCATCAAATGAAGTAAATGAATCAAGAGCAGTATTTAAATCATCAAATTTTGATGATTTTTTTTCATCTGTATTACCTAGAAGATAGTCTATTGATACCTCATAAAAATCAGCTATTTTTTGTAAATTTTTACTGGCAGGATTTCTTTTCCCTGTTTCCCATTGTCCATAAAAAGCAGTAGAAATTCCAAGTTTTTCTGCAATTTCTTTTTGTGTGAGTTTAGCCTCTAAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGAATTGAATGCCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2154483-2153796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047616.1 Lactococcus raffinolactis strain Lr_19_5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2154482 36 100.0 37 .................................... TTTCGTTATCGTTGAAATAACTATCTAGTGTCTCACG 2154409 36 100.0 35 .................................... CTTCCACTTGTTCGATTTGTTCCACTTGTTCTGTC 2154338 36 100.0 35 .................................... ATTTATAGATTTTTCATCTATAATTTTTTCAATCA 2154267 36 100.0 38 .................................... TTTCATTTCTTCTTGTGTCATTTTCATGTTTTCTCTTT 2154193 36 100.0 34 .................................... TCCGTAATCAAATATTTCGTTAATTTCTGCTTCT 2154123 36 100.0 39 .................................... TGTGCCTCCTTAATCAAATACCGCTCTAACTCTTTATCC 2154048 36 100.0 36 .................................... TCTTCTGTCATTTTCATTTCTCCTTTTTGTTGTTCG 2153976 36 100.0 36 .................................... CAATTTCAATCAAGATAGAATCTAACAACTCAGCTT 2153904 36 100.0 37 .................................... TGCCTTCTTCAAAATAATAGATGCCGTCTATTGTTTC 2153831 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 100.0 36 AAATACAACCGCTCCTCGATAAAAGGGGACGAGAAC # Left flank : CCTCGATAAAAGGGGACGAGAACAATAATTATGAAGCTAGAGAAGTTACCTTGAAGGATAATTTCATCAGTCCATATATTGGCAAAGAGTATCGTAATGCCACAGAAGTTCTTAGCATGGGATTGGAAAGTATTTTCGAGCCGCAAAATGGACATGTTAAACGCTATTTGGGTAACGGAGATTATGAAATGGCAAAAATAACCGATGACAAAGAATATTTAAATTTGATAATCGGCATAATCTTGAAAGGGTAAAGAAATGAAACTAAAAACACTTGAAGAATTTCCAATCGAGACTAAAAAGTTGGAAAAACAATATGAAAATCATTTTGGAGTTGCTTATCCTGATAGAATTATAGGTTTTTGGGATCCATTAAATATCACGCTTGAAGAAGCTAATATCGGCTATGAAGAAATGGCAAAGGCGGTGAATGAAGCAATAGCTAATAATGAACCGTTTGAGGAGTTTTCACCTGAATTGTGGGATAGTATTATTTTTTA # Right flank : CATATGATTCAGGTATTGCTTCTACACCAAGTTTTAAAGGGCACCTCTAATAATATTTGGAATACTTGGTTTTAGATTTTCAATTACAGCTTTATGGCTAATAGGAAAAGAAACATATCAAACAAATAAAATAAAAAAATACACTAGTTATTATAACCCATAATGCCGTTGATTTTGATATTGGTTGTGTTAGTAAATCATCGAGGATCGGAATTCGACTACCAATTCCAAGTATCGCATCAATTATAATTAATACATAAATAGTAATCAGAAATGGCATTCGTTTACGCTCAATTATGAATATTATTGTTGTGATAACTAATAAGATTAAGATAATACCAATTCCCCACCAACCTGGTATCCTAAAAGAAAGTGGTGTTTTAAAAAAAACACTCCCGATGATTAGGCTAACAAAAATTACAATACCAAAAGCATAATTGGCGGACCTATTGTTGCAATTGTATGTGGGGTCGGAACTTACTACTATATCATGAGAAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATACAACCGCTCCTCGATAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 2156013-2154960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047616.1 Lactococcus raffinolactis strain Lr_19_5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2156012 36 100.0 36 .................................... GCGACAGTTAATGTTAAGTATGTTGATACAAAAGGT 2155940 36 100.0 37 .................................... CCATGTTTCGTTCCTTCTCCATAACCAAAATCTAGAT 2155867 36 100.0 35 .................................... ATCTAGCATTAGCTCTGTATCTTTTTTACCGTCAG 2155796 36 100.0 41 .................................... CATCTTTTGTTCTAAATGTATATACTAATACTTCCATTTCT 2155719 36 100.0 37 .................................... TATTTTTTTAGTACGCTGTCTTGAACAATTCTTCTGT 2155646 36 100.0 36 .................................... TTATTATCGAGAAACAATTTGAGTGCATCATATGAG 2155574 36 100.0 37 .................................... TAAGTAGCTTATAATCTTCATACTTAGCGAACGCTTC 2155501 36 100.0 34 .................................... TTTCTTGTCTGTCATGTATGCGCCGTGTTTGCGT 2155431 36 100.0 36 .................................... CTGTTCGATTATTTTTTTCAATTCAACTCCTTTTAA 2155359 36 100.0 38 .................................... TTAAAATACTCTCACACCGCTATCCATCAAAGATTGGA 2155285 36 100.0 36 .................................... TCAGCTAATGTATCGATTATTTTTTTTGCTTCTTTT 2155213 36 100.0 37 .................................... GCTATTTACATTTAAAATACGCTAACGCCTTTATCTT 2155140 36 100.0 38 .................................... AGTTTGTGGATATTTGGATAACTATACGCTGAAACATT 2155066 36 100.0 35 .................................... ATCTCAATTCTTTTTTCTTGTTTGTCTTGTTCGTG 2154995 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 100.0 37 AAATACAACCGCTCCTCGATAAAAGGGGACGAGAAC # Left flank : TAAGGATTTTGGCATCAATGGCGCATGAATTTAAACTTGTATTCTCAGAAGAATCTAAACGTGATTTAAAGCAGATTTACGACTACATTGTTTTAAATTTCTTCTCTGAAATTTCTGCTCGTAGAAAAGTTGACTTACTTTTGTCAGGAAGTGAAGTGTTGGAAAAAATTCCAGAATTAGGTTTTGATGTTTTTCAAAAGACAGGTAAAAAATTTCTGGGAATGGAAAATATTCGGATTCTAGTTATTGAAAAATATTTGGCAGTTTATCAGATTGATTTTGAAGAAAACACAATCAATATTTTTCGTTTTTTAAATATTAAAACCAATTATTTACGGTACTTGAGATAGTTTTTTACTTGGATTTTTGCTATACTTAAGAAACAACAATTAAACTTTTTCAATCTACCTGTAGGTCAATCTAGCCCATTGTTTTGGTCGATATTTGACCAAGACAATAGCGCGGAAAAGCTTACTACAAACACGTTTTTAAAGTTCTCT # Right flank : AATAATTATGAAGCTAGAGAAGTTACCTTGAAGGATAATTTCATCAGTCCATATATTGGCAAAGAGTATCGTAATGCCACAGAAGTTCTTAGCATGGGATTGGAAAGTATTTTCGAGCCGCAAAATGGACATGTTAAACGCTATTTGGGTAACGGAGATTATGAAATGGCAAAAATAACCGATGACAAAGAATATTTAAATTTGATAATCGGCATAATCTTGAAAGGGTAAAGAAATGAAACTAAAAACACTTGAAGAATTTCCAATCGAGACTAAAAAGTTGGAAAAACAATATGAAAATCATTTTGGAGTTGCTTATCCTGATAGAATTATAGGTTTTTGGGATCCATTAAATATCACGCTTGAAGAAGCTAATATCGGCTATGAAGAAATGGCAAAGGCGGTGAATGAAGCAATAGCTAATAATGAACCGTTTGAGGAGTTTTCACCTGAATTGTGGGATAGTATTATTTTTTAAAATACAACCGCTCCTCGATAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATACAACCGCTCCTCGATAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //