Array 1 197262-196985 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLG01000002.1 Chitinophaga japonensis strain DSM 13484 LX66DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 197261 47 100.0 29 ............................................... GTAACAACACCAGAGCCGAATGTTGTTGG 197185 47 100.0 30 ............................................... AAGTACCATGTACCCCCAACGTTCTGCACC 197108 47 100.0 30 ............................................... TTCACCAACGCGCAATACCAACAGCTTTTG 197031 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTGATTTGCTTTCAAATTAATCTGTACCTTAGGTCAACAACAAC # Left flank : TTTTTGAATACGAGTTCCTGGACGAGCGGATCGGTAATTTTTACCGGGAGGAAAGACAGCTCTCCCGGTTGTACAAGGTGTTTTCAGCGATTGCCATTTTTCTGAGCTGCCTGGGCTTGTACGGGCTGGCCTCCTTTATGGCGGTACAACGTATTAAAGAGGTAGGCATCCGCAAGGTGCTGGGCGCTACCACGGCCCACGTGGTATACCTGTTCTCCAAAGATTTTATGCTGCTGATAGCGATCGCCTTTGTAATTGCCTGTCCGCTGACCTGGTATTTCATGCACCAATGGCTGCAGCATTTTGTATACCATATTAACATCGGCTGGTGGACGTTTGTAGCCGGCGGACTGGGCGCGGTAGTGATAGCACTGGTGACGATCAGCTTCCAGGCGATAAAGGCAGGGATGGCGAACCCGGCGGAGAGTTTGAAGGTGGAGTAGGGGGTAGGACATTAAGTCAACGATAACTTGGTATCTCGGCGTAGGGCATATCTTTAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAATCTGTACCTTAGGTCAACAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 20167-20334 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLLG01000003.1 Chitinophaga japonensis strain DSM 13484 LX66DRAFT_scaffold00002.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20167 36 100.0 30 .................................... TAGACCTCATGCGGGGTAACGCCGCCGGGA 20233 36 100.0 30 .................................... CGACTGGTCCCGGAGGTCAAGGTTGACGTG 20299 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GGTGTACCTGCCATGCAAATAGATGGCTTTCACACC # Left flank : TGCAAATAGATGGCTTTCGCACCGGTTTTGTGGGAGAAGATCCCGAAGAGAAGGGTGTACCTACCATGCAAATAGATGGCTTTCACACCCTCGTTGAAAGAGGTTATTGCGACGGACAAGGTGTACCTGCCATGCAAATAGATGGCTTTCGCACCGGTTTTGTGGGAGAAGATCCCGAAGAGAAGGGTGTACCTACCATGCAAATAGATGGCTTTCACACCCTCGTTGAAAGAGGTTATTGCGACGGACAAGGTGTACCTGCCATGCAAATAGATGGCTTTCACACCTAATTTCACCCCGTACCTAGTTATCGATCAGGTGTACCTGCCATGCAAATAGATGGCTTTCACACCTCTAACGTTGCACTGCCTATCCGTTCCAGTGGTGTACCTACCATGCAAATAGATGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCATGCAAATAGATGGCTTTCACACCGGCGAGGGAAAACGGATTTACCATTAAAGG # Right flank : CATGAATCTAATAAGTGCTTCAGTAATAACGCCCAAGCTCTAGTGTATGACATCTGAAAATTGCATGGGATGATACCTCTAGTCCTGATACAGACTAATTTCTCATTTCTACTCTTCCCGATTGTTTTCATACTCAGACCGGTCTCTTTTTTCATGCAAATTCTTTTCTATACCCAGCAATTGCCGTACAGAGCTCCCTTCCCGCGTAAGCCATGAAAAACTTCCGTTACTTGGGATATCGTTATGAAAGGTAATATTTCGGTAATCACTTAGTGTTATGTTGAGATCCTTATCTATATTATTGTCAACTGTACCGGACAGCTTTAATATGCTATCGAAATTGAAGAAGTATGCCGGATATTTTCCATAGTATTCAGTTTTTTCATATTCATTTTTTAGCCATTTATGAAAAGCCTCTTTGCTTTCATAACCGTTAAGCGCCTGCTGCAGTATCTTCTTCTCAAACTCTAATAGATATCTCCCTAGCTCCAGGCCTGTTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGTACCTGCCATGCAAATAGATGGCTTTCACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //