Array 1 210501-208641 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPQ01000005.1 Salmonella enterica subsp. enterica serovar Muenchen strain 128 NODE_5_length_233341_cov_20.548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210500 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 210439 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 210378 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 210317 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 210256 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 210195 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 210134 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 210073 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 210012 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 209951 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 209890 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 209829 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 209768 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 209707 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 209646 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 209585 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 209524 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 209463 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 209402 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 209341 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 209280 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 209219 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 209158 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 209097 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 209036 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 208975 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 208914 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 208853 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 208792 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 208731 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 208670 29 96.6 0 A............................ | A [208643] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227774-226769 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPQ01000005.1 Salmonella enterica subsp. enterica serovar Muenchen strain 128 NODE_5_length_233341_cov_20.548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227773 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 227712 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 227651 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 227590 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 227529 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 227468 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 227407 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 227346 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 227285 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 227224 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 227163 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227102 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227041 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 226980 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 226919 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 226857 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226796 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //