Array 1 94641-96498 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPA01000005.1 Salmonella enterica strain BCW_4892 NODE_5_length_278309_cov_0.296061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94641 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 94702 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 94763 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 94824 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 94885 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 94946 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 95007 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 95068 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 95129 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 95190 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 95251 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 95312 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 95373 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 95434 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 95495 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 95556 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 95617 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 95678 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 95739 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 95800 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 95861 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95922 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95983 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96044 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96105 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 96166 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 96227 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 96288 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 96349 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 96410 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 96471 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113180-114919 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPA01000005.1 Salmonella enterica strain BCW_4892 NODE_5_length_278309_cov_0.296061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113180 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 113241 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 113302 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 113363 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 113424 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 113485 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 113546 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 113607 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 113668 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 113729 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 113790 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 113851 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 113912 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 113973 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 114034 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 114095 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 114156 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 114217 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 114279 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 114341 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 114402 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 114463 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 114524 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 114585 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 114646 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 114707 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 114768 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 114829 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 114890 29 100.0 0 ............................. | A [114917] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //