Array 1 5281-8668 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZC01000300.1 Xanthomonas fragariae strain JVD-0051 isolate JVD-0051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5281 28 100.0 32 ............................ TGACGTTGATCTACCGGCCGACGCCTTCACGC 5341 28 100.0 32 ............................ TCTCAGTCGGCAAGACCCATGTCTATGGCTGA 5401 28 100.0 32 ............................ TACTACCAGGAGGGTTGGCCAATGAAAATCTG 5461 28 100.0 32 ............................ GAGAGTGAAAAGTGGGTTTGCAGGGCTGGCTA 5521 28 100.0 32 ............................ ACATCCCTGGTCTTCACAGAGTAGGGGAGGTG 5581 28 100.0 32 ............................ TTGCTGCATGAAGGTGTACCCAACGCAATCGC 5641 28 100.0 32 ............................ CTCTCCTCAGCCACGGACCAATGCAATAGCAA 5701 28 100.0 32 ............................ TGCTATGGCAGAACGGCTCAGAGTTTCGTACT 5761 28 100.0 32 ............................ CAGCGCTACCAAGATGCAAGCTACCGACATGA 5821 28 100.0 32 ............................ AAAACCATTTGTGCCCGTAGAGCTTTCCATCC 5881 28 96.4 32 T........................... TCGACGACGCCGAAGAGGTTCGCCAGTGGTCG 5941 28 100.0 32 ............................ TGCGGGACGTGCTCCGGCACAGACGCGAAAAG 6001 28 100.0 32 ............................ ATACTTCGACCGTATACGAATAACGCTCTCCC 6061 28 100.0 32 ............................ TAGATACCTCTAGGGGCGCTGGCGGGGTTTCT 6121 28 100.0 32 ............................ GTATGGAAGCACCCGCTTTAGCTGTGCTGAGT 6181 28 100.0 32 ............................ GCCGGGGAGAGAGGCACACGCAGGTTTCCGTT 6241 28 100.0 32 ............................ AAACTTGGACAGACAGTGCTACGATGACTAGG 6301 28 100.0 32 ............................ AAGCAGGAAACCCTGCGGCGTGGGAAGAGATG 6361 28 100.0 32 ............................ CCCAAACGAACTGGTCCAGGCTAGGATCCGTT 6421 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 6481 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 6541 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 6601 28 100.0 32 ............................ AGGACGTTTGAGTAGCCCGGCAGGGTCTGTTC 6661 28 100.0 32 ............................ GAAGCGTCTCAAGGCGCGCCTGCTGCGGGAAC 6721 28 100.0 32 ............................ GACGCAGACAGGCGCTGCGCCGCAAGAACCAC 6781 28 100.0 32 ............................ ATGGTCGCCAGGACGCCGCCGAACGCTTCAAG 6841 28 100.0 32 ............................ CGAGACGAAGCCGAGGCACGTGCCAGAGTAGC 6901 28 100.0 32 ............................ TAGGCAGCAAAACTGTTACTAACAGGGACACT 6961 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 7021 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 7081 28 100.0 32 ............................ GCGTTTTGCGAGCCTTCGTGTTTCGACGGATA 7141 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 7201 28 100.0 32 ............................ TCCCGCCGGTCTTTTATGGGGATAGGGCAGGG 7261 28 100.0 32 ............................ TATGCCGGTGATCGGGAGAAGGCACCCGTTAC 7321 28 100.0 32 ............................ ATGATCATCAACAAGGTGCTAGCACCCAAAGC 7381 28 100.0 32 ............................ GACCACTGGATCTCGTTTAGGTCTACCGTCCC 7441 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 7501 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 7561 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 7621 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 7681 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 7741 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 7801 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 7861 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 7921 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 7981 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 8041 28 100.0 32 ............................ ATTGCATACAAAGACGGCATCATCGCCTCGGA 8101 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 8161 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 8221 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 8281 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 8341 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 8401 28 100.0 32 ............................ GTGTCGGGATCTTCCTCAAATCTTGCAGGAGA 8461 28 100.0 32 ............................ TACTGCCACAAGAACCCCGGGATCGAGGATCT 8521 28 96.4 32 ..........................C. GGGATGTCCGGATGCTGGCAGTGACGCGTTGT 8581 28 100.0 32 ............................ ACATCAAAGGCTGCTACTGAAGCTCTGGATGA 8641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 57 28 99.9 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGTCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACACCAGGAAACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //