Array 1 51965-56018 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFB01000004.1 Streptococcus ruminantium strain DTK366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51965 36 100.0 30 .................................... TGTTAAGTTTCCAAAAATCTATATGAAACA 52031 36 100.0 30 .................................... CTGAAGAAGTGACTACAGCACCAACTTCAT 52097 36 100.0 29 .................................... TGTGTACAACTTAACTTTTTTGGTTGCCT 52162 36 100.0 29 .................................... ACCGCCTTCTATTCTCAACTTTTGGGTGG 52227 36 100.0 30 .................................... TTAAACTGCTTTCAAGCTGAATTTGAAAGC 52293 36 100.0 30 .................................... CTTAATATCTCTGTTGCTAGCACCCTGTCT 52359 36 100.0 30 .................................... GTCAATTCTGTCCAGCTCGCTTTTGTTTCT 52425 36 100.0 30 .................................... CCTTCACCGGTAACCCCCTCAAGCAAAAGA 52491 36 100.0 30 .................................... TGGGATATATTATTCGATTGAAAAATTAAA 52557 36 100.0 30 .................................... CAGCTCGCTTTCTAATTGTTGAAAATCATC 52623 36 100.0 30 .................................... AAAATCGTCCCAAGAATCGCTAAGGTATTG 52689 36 100.0 29 .................................... TGTTGAAGAGGGAACGATTTTTGAAGCTG 52754 36 100.0 30 .................................... TGAACCTTATCTACACTATATACATTTATT 52820 36 100.0 30 .................................... AAATGACAATTCAACTAAATAGGAATGCAC 52886 36 100.0 30 .................................... AATTATCTGCGACAGCAATCGGCATAGCTT 52952 36 100.0 30 .................................... ACCAATTATACCTTTTATAATATCGCCTAC 53018 36 100.0 30 .................................... TAAAGCGTCTCTCCGACGCAAGTTGTCGTT 53084 36 100.0 30 .................................... CTTTAGCGCTATCAGGAGGAGTTGCTCTTC 53150 36 100.0 30 .................................... GGTTTGAATCCGGATAAATACGCTCAGTTG 53216 36 100.0 30 .................................... TTTTCAAACCCTCAGATAGTAGAGTGTTTT 53282 36 100.0 30 .................................... ATCTTGGTTTGGAGCTGGCAAACAATCAAG 53348 36 100.0 30 .................................... ATTTAGCGCTATCAGGAGGAGTTGCTCTTC 53414 36 100.0 30 .................................... TAGTCTAAACAGACAAATTCGAGCTAATGG 53480 36 100.0 30 .................................... GACCAAATTCGCAGAACCTTCCCTCGGGAA 53546 36 100.0 30 .................................... AACATACTTACGCTTATCGTCTAGCGTCCG 53612 36 100.0 30 .................................... TTAGACACGTATATAAATCCCTCGACACTA 53678 36 100.0 29 .................................... CTGGTGTCTTAGCGTTTTCTTTCTTGTAA 53743 36 100.0 29 .................................... TACCTATTATTTTGACCTAGCAAAAACCA 53808 36 100.0 30 .................................... CTGGTTTTCGTCCGTTGTTTTGTCCTGCGC 53874 36 100.0 30 .................................... AATATGGATATATTCTAAAAGCCCTTTTAA 53940 36 100.0 30 .................................... GTTTTTGTGGGAACACACCACATTAGTTCT 54006 36 100.0 30 .................................... GTTAGCTTTGTTCGGTCGTTGGCATGGCGT 54072 36 100.0 30 .................................... GTATCTATACTAATCACCTCCGCCACGCAA 54138 36 100.0 30 .................................... TTTTGAATAGAGTTGCTAGACGTAATCTTA 54204 36 100.0 30 .................................... CCGCTACTGAAAAAGTATGGGCTGGTATTG 54270 36 100.0 30 .................................... ACCCAGGGGTGAAATCAAGAACTTCTGAGG 54336 36 100.0 29 .................................... TTACTTGGCGGCAACATAACACTTAATAA 54401 36 100.0 30 .................................... ACCCAGGGGTGAAATCAAGAACTTCTGAGG 54467 36 100.0 30 .................................... TATAATCTAAAAACATCCAAGCCATCCACA 54533 36 100.0 30 .................................... GAATCAAGACAACGTGTGAATGTAGTTGCT 54599 36 100.0 30 .................................... CAGAACAAGCTACACCAGAAAATATCTCTA 54665 36 100.0 30 .................................... AAGGTGTAACGTTCCATAGACTTTGTCATA 54731 36 100.0 30 .................................... GCGTGAACAAATTAAGGAACGTATGCAACT 54797 36 100.0 30 .................................... CTAGTAAGGTGGGTAACGACGTGGAATGGT 54863 36 100.0 30 .................................... TCTCCTTATAATGTTATTTCATTATAAGGT 54929 36 100.0 30 .................................... GTAACACTTACGGCAATACGGTATCGGTAA 54995 36 100.0 30 .................................... ATATGACAGAGTGGCTGGGTTAATGTAGTC 55061 36 100.0 31 .................................... CTAGGCGATAAAGTCACCCTTAACCGAGCTG 55128 36 100.0 29 .................................... TTTAAAGAGGTAAACGAATGCTTAAACAA 55193 36 100.0 30 .................................... TTTCTAGCTAAGTCATTCACGTTACCATCG 55259 36 97.2 30 .........T.......................... AGATTACGGGCACGACATACATCCAGGATG 55325 36 100.0 30 .................................... CCAACCACCCAGACACCCATAAGACTACCA 55391 36 100.0 30 .................................... TATTGTTGGAGTTGAATGATTGAATATCTT 55457 36 100.0 30 .................................... AAAGATTTGCAAACGGTAGAACATTGGTAG 55523 36 100.0 30 .................................... TTCAGACCAAGTTTCAAAGCGTTTCCCCTG 55589 36 100.0 29 .................................... GATTTCGTTAAAATTCATTGTTGAACCTC 55654 36 100.0 29 .................................... TGCTTTTCGAAGAGTAGCTAAATAGTCCT 55719 36 100.0 30 .................................... GATTAAGATTGGAGTCAAGATAGCAATAGC 55785 36 100.0 30 .................................... TTGACCGGAAATCTAGCTCCTTTACTCATA 55851 36 100.0 30 .................................... ATTAGAAATCTGAATAATACCATTTCTACT 55917 36 100.0 30 .................................... CTAGGTGCTGTAATTGGTAAAAGTGAACTA 55983 36 86.1 0 .................GC....A...T.......T | ========== ====== ====== ====== ==================================== =============================== ================== 62 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG # Right flank : TGCTTGACAATATGATTAGATAATGATATTGTTCTTGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTGCGGTAAGGTCAAGAAAAAAGTCAGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACCGTTGTCAGCTGTAATCGTGATATTCGATTGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACAGCTTGCGCCTCTTGTTGCTCTTTGCGTAGTTTTTGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 56378-56817 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFB01000004.1 Streptococcus ruminantium strain DTK366, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 56378 36 100.0 30 .................................... CGTTGTCAGCTGTAATCGTGATATTCGATT 56444 36 100.0 29 .................................... AGCTTGCGCCTCTTGTTGCTCTTTGCGTA 56509 36 100.0 30 .................................... ATTTTGGAGCTACTAAAGATTGGCTCCCTA 56575 36 86.1 37 .................GC....A...T.......T GCTTGACAATATGATTAGATAATGATATTGTTCTTGT 56648 36 75.0 30 ...C...A.T...T.G.....G.....AG....G.. AACCAAAGCTAACTACAAACGTGAATTTTA GG [56654] 56716 36 100.0 30 .................................... GTCCAGTTTGTGTTAAAGTCACCTTTTCAT 56782 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 92.5 31 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : CAGTAAAACATTAGAAATCTGAATAATACCATTTCTACTGTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAACCTAGGTGCTGTAATTGGTAAAAGTGAACTAGTTTTTGTACTCTCAAGGCTTAAATAATAGTAAAATGCTTGACAATATGATTAGATAATGATATTGTTCTTGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTGCGGTAAGGTCAAGAAAAAAGTCA # Right flank : TCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAGTAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGTGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTAATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //