Array 1 3074378-3072901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3074377 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3074316 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3074254 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3074193 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3074132 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3074071 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3074010 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3073949 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3073888 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3073827 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3073766 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3073705 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3073644 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3073582 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3073479 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3073418 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3073357 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3073296 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3073235 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3073174 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3073113 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3073052 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3072991 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3072930 29 96.6 0 A............................ | A [3072903] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3092125-3090510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015157.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NC983 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3092124 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3092063 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3092002 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3091941 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3091880 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3091819 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3091758 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3091697 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3091636 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3091575 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3091514 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3091453 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3091392 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3091331 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3091270 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3091209 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3091148 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3091087 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3091025 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3090964 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3090903 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3090842 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3090781 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3090720 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3090659 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3090598 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3090537 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //